Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30308.Seq
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 135 5e-32
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 131 7e-31
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 128 4e-30
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 105 3e-23
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 104 1e-22
11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908... 30 2.5
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 29 4.4
02_05_1084 + 33984814-33984938,33985112-33985201,33985277-339853... 29 5.8
08_02_0960 + 23058393-23059739 28 7.7
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 135 bits (326), Expect = 5e-32
Identities = 61/84 (72%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNE IDE+E L + R+L A+ L E WGVNVQPYSGSPANFA YTG+++PH RIMG
Sbjct: 20 RYYGGNEVIDEVEELCRARALAAFHLDPEAWGVNVQPYSGSPANFAAYTGLLQPHERIMG 79
Query: 439 LDLPDGGHLTHGFFTA-TKKISAT 507
LDLP GGHLTHG++TA KKISAT
Sbjct: 80 LDLPSGGHLTHGYYTAGGKKISAT 103
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/78 (42%), Positives = 46/78 (58%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
I+FES+PYKV ++G +DYDKL E A F+P+LII G + +D Y R I +
Sbjct: 105 IYFESLPYKVSSETGYVDYDKLEEKAMDFRPKLIICGGSAYPRDWD-YARFRAIADKCGA 163
Query: 690 LNLMADXGSRYLGLVAGQ 743
+ L+ D + GLVA Q
Sbjct: 164 M-LLCDM-AHISGLVAAQ 179
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 203 LQCLSSCLHNKYSEGMPINGTMGGMNIL 286
++ L S L NKYSEGMP + GG ++
Sbjct: 1 MEALGSPLTNKYSEGMPGSRYYGGNEVI 28
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 131 bits (316), Expect = 7e-31
Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGN+ IDEIE L ++R+L A+RL + WGVNVQPYSGSPA FA YT ++ PH RIMG
Sbjct: 67 RYYGGNDVIDEIENLCRDRALAAFRLDAASWGVNVQPYSGSPATFAAYTALLNPHDRIMG 126
Query: 439 LDLPDGGHLTHGFFTA-TKKISAT 507
LDLP GGHLTHG++TA KKISAT
Sbjct: 127 LDLPSGGHLTHGYYTAGGKKISAT 150
Score = 71.3 bits (167), Expect = 8e-13
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +2
Query: 104 ADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPINGTMGGMNI 283
ADP + D++ +EK RQR+G+E+IASENFTS V++ L S L NKYSEGMP GG ++
Sbjct: 15 ADPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDV 74
Query: 284 L 286
+
Sbjct: 75 I 75
Score = 55.2 bits (127), Expect = 6e-08
Identities = 33/78 (42%), Positives = 45/78 (57%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
I+FES+PYKV +G IDY+KL E A F+P+LII G + +D Y R + +
Sbjct: 152 IYFESLPYKVSAATGYIDYEKLEEKALDFRPKLIICGGSAYPRDWD-YAKLRAVADKVGA 210
Query: 690 LNLMADXGSRYLGLVAGQ 743
L L+ D + GLVA Q
Sbjct: 211 L-LLCDM-AHISGLVAAQ 226
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 128 bits (310), Expect = 4e-30
Identities = 58/82 (70%), Positives = 66/82 (80%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNEYID E L Q R+LEA+RL +WGVNVQP SGSPANF VYT +++PH RIM
Sbjct: 93 RYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHERIMA 152
Query: 439 LDLPDGGHLTHGFFTATKKISA 504
LDLP GGHL+HG+ T TKKISA
Sbjct: 153 LDLPHGGHLSHGYQTDTKKISA 174
Score = 72.5 bits (170), Expect = 4e-13
Identities = 39/69 (56%), Positives = 45/69 (65%)
Frame = +2
Query: 68 MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEG 247
M K LN+ L E DPE+ DII EK RQ GLE+I SENFTSV V+Q + S + NKYSEG
Sbjct: 29 MWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 88
Query: 248 MPINGTMGG 274
P GG
Sbjct: 89 YPGARYYGG 97
Score = 61.7 bits (143), Expect = 7e-10
Identities = 33/79 (41%), Positives = 53/79 (67%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
IFFE+MPY++D +GLIDYD++ ++A LF+P+LI+AG + + + Y R++ +Q
Sbjct: 177 IFFETMPYRLDESTGLIDYDQMEKSAVLFRPKLIVAGASAYAR-LYDYDRMRKVCDKQKA 235
Query: 690 LNLMADXGSRYLGLVAGQV 746
+ L+AD + GLVA V
Sbjct: 236 I-LLADM-AHISGLVAAGV 252
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 105 bits (253), Expect = 3e-23
Identities = 48/82 (58%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYY GN++ID IE L +R+L A+ L WGVNVQPYS + ANFAVYTG++ P+ RIMG
Sbjct: 169 RYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLPNDRIMG 228
Query: 439 LDLPDGGHLTHGFFTAT-KKIS 501
LD P GGH++HG++T + KK+S
Sbjct: 229 LDSPSGGHVSHGYYTPSGKKVS 250
Score = 59.7 bits (138), Expect = 3e-09
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Frame = +2
Query: 38 AAKRYISSTKMSAKLLNSNLW------EADPELFDIIVKEKDRQRAGLEMIASENFTSVP 199
AAKR ++ + A+ W EADP++ +++ +E+ RQ G+E+IASEN+
Sbjct: 89 AAKRRAAAGGLEARRAAVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRA 148
Query: 200 VLQCLSSCLHNKYSEGMP 253
VL L S L NKYSEG+P
Sbjct: 149 VLDALGSHLTNKYSEGLP 166
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQD 641
IFFE++ Y+V+P +G IDYDK+ E A F P+++I G + +D
Sbjct: 254 IFFENLSYRVNPHTGYIDYDKVEEKAVDFHPKILICGASSYPRD 297
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 104 bits (249), Expect = 1e-22
Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Frame = +1
Query: 247 HAHQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHG 426
H RYYGGN++ID IE L R+L A+ L WGVNVQPYS + AN AVYTG++ P
Sbjct: 195 HPGARYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKD 254
Query: 427 RIMGLDLPDGGHLTHGFFTAT-KKIS 501
RIMGL+ P GGH++HG++T + KK+S
Sbjct: 255 RIMGLEPPSGGHVSHGYYTPSGKKVS 280
Score = 60.5 bits (140), Expect = 2e-09
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +2
Query: 86 NSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPINGT 265
N L EADP++ ++ E+DRQ G+E+IASENF VL+ L S L NKYSEG P
Sbjct: 141 NQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY 200
Query: 266 MGG 274
GG
Sbjct: 201 YGG 203
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQD 641
IFFES+ YKV+P++G IDYDKL E A F P+++I G + ++
Sbjct: 284 IFFESLSYKVNPQTGYIDYDKLEERAMDFHPKILICGGSSYPRE 327
>11_03_0028 -
9080650-9080667,9080701-9080794,9082099-9082185,
9082276-9082333,9083535-9083598,9083837-9083898,
9083976-9084027,9084410-9084530,9085369-9085463
Length = 216
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 297 DTGTEQVSGSIQIKIGRMGRQCTAIFRLSGELC 395
D+G+ I I IGR G C+++ R G+ C
Sbjct: 135 DSGSGPRLDGINISIGRRGESCSSVCRAKGQSC 167
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 339 IGRMGRQCTAIFRLSGELCRLYRHCRTPWQD 431
+GR G++ ++ + +SGELC +T W D
Sbjct: 43 LGRWGKKASSEWNISGELCSGLASDKTNWDD 73
>02_05_1084 +
33984814-33984938,33985112-33985201,33985277-33985335,
33985882-33985989,33986615-33986692,33987057-33987091,
33987457-33987522,33987973-33988011,33988040-33988051
Length = 203
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 167 MIASENFTSVPVLQCLSSCLHNKYSEGMPINGTMGGMNILM 289
MI TSVP+L ++CL+N+ G + T G + L+
Sbjct: 124 MILKAEITSVPLLHMRTACLYNESIVGFYQDATTGRLKRLL 164
>08_02_0960 + 23058393-23059739
Length = 448
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 579 LLVCRNQLIRF*DLPYMACFQR-ILRSRYFFSSSKETMGEMST 454
L+ CR+ L LPY ACFQR + +Y++ T G +++
Sbjct: 144 LVPCRSPLCAA--LPYPACFQRSVCVYQYYYGDEASTAGVLAS 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,579,477
Number of Sequences: 37544
Number of extensions: 458521
Number of successful extensions: 971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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