Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30308.Seq
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 29   3.4  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    29   4.5  

>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 533 IWHAFKEYYVADIFLVAVK-KPWVRCPPSGKSNPIILP 423
           I H   + Y+ DIF V  K +P+V C P  K NP ILP
Sbjct: 411 IVHWNNDNYI-DIFCVGHKIRPFVNCGPLYKRNPGILP 447


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 461  CPPSGKSNPIILPWGSTMPV*TAKFAGEPEYGCTLTPHSSD 339
            C PSG++ P  +PW ++     AK  G  ++ C  T   +D
Sbjct: 939  CCPSGETTPSAVPWTNSYRRGAAKQWGTRKFSCQTTESWTD 979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,721,250
Number of Sequences: 59808
Number of extensions: 517551
Number of successful extensions: 1051
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)