Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30308.Seq
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effec... 137 8e-33
U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effec... 137 8e-33
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 31 0.74
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 29 3.0
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ... 29 5.2
Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical pr... 28 6.9
>U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effect
lethal protein32, isoform a protein.
Length = 484
Score = 137 bits (332), Expect = 8e-33
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNE+ID++E+L Q R+LE + L +WGVNVQP SGSPANFAVYT IV +GRIMG
Sbjct: 84 RYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMG 143
Query: 439 LDLPDGGHLTHGFFTATKKISAT 507
LDLPDGGHLTHGFFT +K+SAT
Sbjct: 144 LDLPDGGHLTHGFFTPARKVSAT 166
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +2
Query: 80 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPIN 259
+L ++ + DPE+FDI+ EK RQR GLE+IASENFTS V+ L S + NKYSEG P
Sbjct: 24 ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 83
Query: 260 GTMGG 274
GG
Sbjct: 84 RYYGG 88
Score = 64.5 bits (150), Expect = 9e-11
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +3
Query: 513 FFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXEL 692
FF+S+PYKVDP +GLIDYDKL + A LF+P+ IIAG + + + Y+ R+I +
Sbjct: 169 FFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLD-YERFRKIATKAGAY 227
Query: 693 NLMADXGSRYLGLVA 737
LM+D + GLVA
Sbjct: 228 -LMSDM-AHISGLVA 240
>U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effect
lethal protein32, isoform b protein.
Length = 507
Score = 137 bits (332), Expect = 8e-33
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNE+ID++E+L Q R+LE + L +WGVNVQP SGSPANFAVYT IV +GRIMG
Sbjct: 107 RYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMG 166
Query: 439 LDLPDGGHLTHGFFTATKKISAT 507
LDLPDGGHLTHGFFT +K+SAT
Sbjct: 167 LDLPDGGHLTHGFFTPARKVSAT 189
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +2
Query: 80 LLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPIN 259
+L ++ + DPE+FDI+ EK RQR GLE+IASENFTS V+ L S + NKYSEG P
Sbjct: 47 ILVDHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGA 106
Query: 260 GTMGG 274
GG
Sbjct: 107 RYYGG 111
Score = 64.5 bits (150), Expect = 9e-11
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +3
Query: 513 FFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXEL 692
FF+S+PYKVDP +GLIDYDKL + A LF+P+ IIAG + + + Y+ R+I +
Sbjct: 192 FFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLD-YERFRKIATKAGAY 250
Query: 693 NLMADXGSRYLGLVA 737
LM+D + GLVA
Sbjct: 251 -LMSDM-AHISGLVA 263
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 31.5 bits (68), Expect = 0.74
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 500 DIFLVAVKKPWVRCPP 453
+ F +A +KPWVRCPP
Sbjct: 477 NFFTIAYEKPWVRCPP 492
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 494 FLVAVKKPWVRCPP 453
F +A KPW+RCPP
Sbjct: 468 FNIAYSKPWIRCPP 481
>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
protein Y46G5A.4 protein.
Length = 2145
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 113 ELFDIIVKEKDRQRAGLEMI-ASENFTSVPV 202
ELF + +KEK + RA +E+I AS F +VP+
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVPM 1859
>Z83118-1|CAB05575.1| 975|Caenorhabditis elegans Hypothetical
protein F56G4.1 protein.
Length = 975
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 803 LKDWWWSQYRQYSDGXRXLHLASNQS 726
L+++WW R+YS G L+LA + S
Sbjct: 89 LREFWWDVNRKYSLGSLFLYLADSTS 114
>Z81552-6|CAB04489.1| 975|Caenorhabditis elegans Hypothetical
protein F56G4.1 protein.
Length = 975
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 803 LKDWWWSQYRQYSDGXRXLHLASNQS 726
L+++WW R+YS G L+LA + S
Sbjct: 89 LREFWWDVNRKYSLGSLFLYLADSTS 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,329
Number of Sequences: 27780
Number of extensions: 397510
Number of successful extensions: 890
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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