Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30308.Seq
(812 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32520.1 68417.m04629 glycine hydroxymethyltransferase, putat... 140 1e-33
At4g13930.1 68417.m02156 glycine hydroxymethyltransferase, putat... 133 2e-31
At4g37930.1 68417.m05363 glycine hydroxymethyltransferase / seri... 131 5e-31
At4g13890.1 68417.m02152 glycine hydroxymethyltransferase, putat... 131 5e-31
At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putat... 125 4e-29
At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putat... 125 4e-29
At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putat... 125 4e-29
At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putat... 114 6e-26
At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putat... 111 7e-25
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 31 0.91
At5g38120.1 68418.m04592 4-coumarate--CoA ligase family protein ... 30 1.6
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 29 4.9
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 29 4.9
At3g47400.1 68416.m05154 pectinesterase family protein similar t... 28 8.5
>At4g32520.1 68417.m04629 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 529
Score = 140 bits (338), Expect = 1e-33
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +1
Query: 256 QRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIM 435
+RYYGGNEYID++E L QNR+L A+RL S +WGVNVQP SGSPANFAVYT I+ PH RIM
Sbjct: 137 KRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIM 196
Query: 436 GLDLPDGGHLTHGFFTATKKISAT 507
GLDLP GGHL+HGF TA +++S T
Sbjct: 197 GLDLPHGGHLSHGFMTAKRRVSGT 220
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +2
Query: 95 LWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPINGTMGG 274
L E DPE+ II KEKDRQ LE+IASENFTS V++ + SCL NKYSEG+P GG
Sbjct: 83 LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
I+FESMPY++D +G++DYD L +TA LF+P+LIIAG +++D Y R+I
Sbjct: 222 IYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDFD-YPRMRKIADSVGA 280
Query: 690 LNLMADXGSRYLGLVAGQV 746
LM D + GLVA V
Sbjct: 281 F-LMMDM-AHISGLVAASV 297
>At4g13930.1 68417.m02156 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 471
Score = 133 bits (321), Expect = 2e-31
Identities = 59/84 (70%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNE+IDEIE L ++R+LEA+ WGVNVQPYSGSPANFA YT +++PH RIMG
Sbjct: 67 RYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDRIMG 126
Query: 439 LDLPDGGHLTHGFFTA-TKKISAT 507
LDLP GGHLTHG++T+ KKISAT
Sbjct: 127 LDLPSGGHLTHGYYTSGGKKISAT 150
Score = 74.9 bits (176), Expect = 6e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +2
Query: 86 NSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPINGT 265
N++L DPE+ D+I KEK RQ G+E+IASENFTS V++ L S L NKYSEG+P N
Sbjct: 9 NTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGIPGNRY 68
Query: 266 MGG 274
GG
Sbjct: 69 YGG 71
Score = 55.6 bits (128), Expect = 4e-08
Identities = 34/78 (43%), Positives = 46/78 (58%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
I+FES+PYKV+ +G IDYDKL E A F+P+L+I G + +D Y R I +
Sbjct: 152 IYFESLPYKVNFTTGYIDYDKLEEKALDFRPKLLICGGSAYPRDWD-YARFRAIADKVGA 210
Query: 690 LNLMADXGSRYLGLVAGQ 743
L L+ D + GLVA Q
Sbjct: 211 L-LLCDM-AHISGLVAAQ 226
>At4g37930.1 68417.m05363 glycine hydroxymethyltransferase / serine
hydroxymethyltransferase / serine/threonine aldolase
(SHM1) identical to serine hydroxymethyl transferase
[Arabidopsis thaliana] GI:6899945
Length = 517
Score = 131 bits (317), Expect = 5e-31
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNEYID E L Q R+LEA+RL E+WGVNVQP SGSPANF VYT +++PH RIM
Sbjct: 110 RYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMA 169
Query: 439 LDLPDGGHLTHGFFTATKKISA 504
LDLP GGHL+HG+ T TKKISA
Sbjct: 170 LDLPHGGHLSHGYQTDTKKISA 191
Score = 72.1 bits (169), Expect = 4e-13
Identities = 38/66 (57%), Positives = 44/66 (66%)
Frame = +2
Query: 77 KLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPI 256
K LN+ L E DPE+ DII EK RQ GLE+I SENFTSV V+Q + S + NKYSEG P
Sbjct: 49 KQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG 108
Query: 257 NGTMGG 274
GG
Sbjct: 109 ARYYGG 114
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/79 (39%), Positives = 52/79 (65%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
IFFE+MPY++D +G IDYD++ ++A LF+P+LI+AG + + + Y R++ +Q
Sbjct: 194 IFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYAR-LYDYARIRKVCNKQKA 252
Query: 690 LNLMADXGSRYLGLVAGQV 746
+ ++AD + GLVA V
Sbjct: 253 V-MLADM-AHISGLVAANV 269
>At4g13890.1 68417.m02152 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 470
Score = 131 bits (317), Expect = 5e-31
Identities = 57/84 (67%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGG E+IDEIE L ++RSLEA+ E+WGVNVQPYSGSPANFA YT +++PH RIMG
Sbjct: 67 RYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMG 126
Query: 439 LDLPDGGHLTHGFFTA-TKKISAT 507
LDLP GGH+THG++++ K ISAT
Sbjct: 127 LDLPSGGHITHGYYSSGGKNISAT 150
Score = 81.8 bits (193), Expect = 5e-16
Identities = 38/67 (56%), Positives = 49/67 (73%)
Frame = +2
Query: 86 NSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPINGT 265
N++L DPE++D+I KEK RQ G+E+IA+ENFTSV V++ L SCL NKYSEGMP N
Sbjct: 9 NTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRY 68
Query: 266 MGGMNIL 286
GG +
Sbjct: 69 YGGTEFI 75
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = +3
Query: 492 KNICYV-IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAG 620
KNI I+FE++PYKVD K+G IDYDKL E A F+P+LII G
Sbjct: 145 KNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICG 188
>At5g26780.3 68418.m03195 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative strong similarity to
SP|P50433 Serine hydroxymethyltransferase, mitochondrial
precursor (EC 2.1.2.1) (Serine methylase) (Glycine
hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 533
Score = 125 bits (301), Expect = 4e-29
Identities = 56/82 (68%), Positives = 65/82 (79%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNEYID E L Q R+LEA++L +WGVNVQ SGSPANF VYT +++PH RIM
Sbjct: 110 RYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMA 169
Query: 439 LDLPDGGHLTHGFFTATKKISA 504
LDLP GGHL+HG+ T TKKISA
Sbjct: 170 LDLPHGGHLSHGYQTDTKKISA 191
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/83 (48%), Positives = 48/83 (57%)
Frame = +2
Query: 26 LQTFAAKRYISSTKMSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVL 205
L T A S K LN++L E DPE+ DII EK RQ G E+I SENFTS+ V+
Sbjct: 32 LSTAAMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVM 91
Query: 206 QCLSSCLHNKYSEGMPINGTMGG 274
Q + S + NKYSEG P GG
Sbjct: 92 QAVGSVMTNKYSEGYPGARYYGG 114
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/79 (40%), Positives = 52/79 (65%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
IFFE+MPY++D +G IDYD+L ++A LF+P+LI+AG + + + Y R++ +Q
Sbjct: 194 IFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYAR-LYDYARIRKVCNKQKA 252
Query: 690 LNLMADXGSRYLGLVAGQV 746
+ ++AD + GLVA V
Sbjct: 253 V-MLADM-AHISGLVAAGV 269
>At5g26780.2 68418.m03194 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative strong similarity to
SP|P50433 Serine hydroxymethyltransferase, mitochondrial
precursor (EC 2.1.2.1) (Serine methylase) (Glycine
hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 533
Score = 125 bits (301), Expect = 4e-29
Identities = 56/82 (68%), Positives = 65/82 (79%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNEYID E L Q R+LEA++L +WGVNVQ SGSPANF VYT +++PH RIM
Sbjct: 110 RYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMA 169
Query: 439 LDLPDGGHLTHGFFTATKKISA 504
LDLP GGHL+HG+ T TKKISA
Sbjct: 170 LDLPHGGHLSHGYQTDTKKISA 191
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/83 (48%), Positives = 48/83 (57%)
Frame = +2
Query: 26 LQTFAAKRYISSTKMSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVL 205
L T A S K LN++L E DPE+ DII EK RQ G E+I SENFTS+ V+
Sbjct: 32 LSTAAMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVM 91
Query: 206 QCLSSCLHNKYSEGMPINGTMGG 274
Q + S + NKYSEG P GG
Sbjct: 92 QAVGSVMTNKYSEGYPGARYYGG 114
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/79 (40%), Positives = 52/79 (65%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
IFFE+MPY++D +G IDYD+L ++A LF+P+LI+AG + + + Y R++ +Q
Sbjct: 194 IFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYAR-LYDYARIRKVCNKQKA 252
Query: 690 LNLMADXGSRYLGLVAGQV 746
+ ++AD + GLVA V
Sbjct: 253 V-MLADM-AHISGLVAAGV 269
>At5g26780.1 68418.m03193 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative strong similarity to
SP|P50433 Serine hydroxymethyltransferase, mitochondrial
precursor (EC 2.1.2.1) (Serine methylase) (Glycine
hydroxymethyltransferase) (SHMT) {Solanum tuberosum};
contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 517
Score = 125 bits (301), Expect = 4e-29
Identities = 56/82 (68%), Positives = 65/82 (79%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYYGGNEYID E L Q R+LEA++L +WGVNVQ SGSPANF VYT +++PH RIM
Sbjct: 110 RYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMA 169
Query: 439 LDLPDGGHLTHGFFTATKKISA 504
LDLP GGHL+HG+ T TKKISA
Sbjct: 170 LDLPHGGHLSHGYQTDTKKISA 191
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/83 (48%), Positives = 48/83 (57%)
Frame = +2
Query: 26 LQTFAAKRYISSTKMSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVL 205
L T A S K LN++L E DPE+ DII EK RQ G E+I SENFTS+ V+
Sbjct: 32 LSTAAMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVM 91
Query: 206 QCLSSCLHNKYSEGMPINGTMGG 274
Q + S + NKYSEG P GG
Sbjct: 92 QAVGSVMTNKYSEGYPGARYYGG 114
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/79 (40%), Positives = 52/79 (65%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQDVSIYKXXREIRRRQXE 689
IFFE+MPY++D +G IDYD+L ++A LF+P+LI+AG + + + Y R++ +Q
Sbjct: 194 IFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYAR-LYDYARIRKVCNKQKA 252
Query: 690 LNLMADXGSRYLGLVAGQV 746
+ ++AD + GLVA V
Sbjct: 253 V-MLADM-AHISGLVAAGV 269
>At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 599
Score = 114 bits (275), Expect = 6e-26
Identities = 51/82 (62%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYY GN+YID+IEIL Q R+L A+ L E+WGVNVQPYS + ANFAV+TG++ P RIMG
Sbjct: 197 RYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGERIMG 256
Query: 439 LDLPDGGHLTHGFFT-ATKKIS 501
LD P GGH++HG++T KK+S
Sbjct: 257 LDSPSGGHMSHGYYTPGGKKVS 278
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +2
Query: 86 NSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMP 253
N ++ EADPE+ + + KEK RQ G+E+IASENF V++ L S L NKYSEGMP
Sbjct: 139 NQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMP 194
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQD 641
IFFES PYKVDP++G IDYDKL E A ++P+++I G + +D
Sbjct: 282 IFFESFPYKVDPRTGYIDYDKLEEKALDYRPKILICGGSSYPRD 325
>At1g36370.1 68414.m04518 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 598
Score = 111 bits (266), Expect = 7e-25
Identities = 52/83 (62%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 RYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMG 438
RYY GN+YID+IE L R+L A+ L+S++WGVNVQPYS + ANFAVYTG++ P RIMG
Sbjct: 193 RYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTGLLLPGERIMG 252
Query: 439 LDLPDGGHLTHGFFT-ATKKISA 504
LD P GGH++HG+ T KKISA
Sbjct: 253 LDSPSGGHMSHGYCTPGGKKISA 275
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +2
Query: 104 ADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMP 253
ADP++ +++ KEK RQ G+E+IASENF V++ L S L NKYSEGMP
Sbjct: 141 ADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLTNKYSEGMP 190
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/44 (50%), Positives = 33/44 (75%)
Frame = +3
Query: 510 IFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGHELFTQD 641
IFFES PYKV+P++G IDYDKL + A ++P+++I G + +D
Sbjct: 278 IFFESFPYKVNPQTGYIDYDKLEDKALDYRPKILICGGSSYPRD 321
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 286 DEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEP 420
D + +N L++ L++ EW V Y+G+ + GI EP
Sbjct: 212 DVCSLTIKNTLLQSCYLRNTEWACGVSVYTGNQTKLGMSRGIAEP 256
>At5g38120.1 68418.m04592 4-coumarate--CoA ligase family protein /
4-coumaroyl-CoA synthase family protein similar to 4CL2,
Arabidopsis thaliana [gi:12229665], 4CL1, Nicotiana
tabacum [gi:12229631]; contains Pfam AMP-binding enzyme
domain PF00501
Length = 550
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 29 QTFAAKRYISSTKMSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQ 208
QT+ K ++ S+LW A + D ++ + +R + ++ S N S+P++
Sbjct: 48 QTYRGKTAFIDAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIV- 106
Query: 209 CLS 217
CLS
Sbjct: 107 CLS 109
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 783 TISPVFGRXSXITPGQQPVPDTVSXYQPS-D*APIG 679
T +PV + TP +PVP T+S P+ D AP+G
Sbjct: 133 TPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVG 168
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 783 TISPVFGRXSXITPGQQPVPDTVSXYQPS-D*APIG 679
T +PV + TP +PVP T+S P+ D AP+G
Sbjct: 133 TPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVG 168
>At3g47400.1 68416.m05154 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Vitis vinifera
GI:15081598, Lycopersicon esculentum SP|Q43143
SP|P14280; contains Pfam profile PF01095 pectinesterase
Length = 594
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 455 PSGKSNPIILPWGSTMPV*TAKFAGEPEYGCTLTPHSSDFNLY 327
PS S P P + P+ +G+ + C TPH+ N Y
Sbjct: 58 PSTTSPPSPGPVAAPSPINNGSVSGDMTWWCNKTPHAETCNYY 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,181
Number of Sequences: 28952
Number of extensions: 371533
Number of successful extensions: 805
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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