Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30303.Seq
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   4.7  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   6.2  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   6.2  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   8.2  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   8.2  

>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 116 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 211
           L+N   P   PA  Y   V  WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 173 RQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKILQ 27
           RQ+Y   +  A V+K   SK   + CG++++   +LV+   K   +I++
Sbjct: 129 RQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIK 177


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 603 LTWSPVSAARGTSTLPATRTALSAIRSEDFXIYWKCP 713
           L W+ + + +GT +LP     L    S D   +W+ P
Sbjct: 78  LQWANIESQKGTLSLPVEYNELEGNVSIDRMSFWQIP 114


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 593 LLLAYLESCLGCTRHEYITCNENSPK 670
           + L+Y   C+    +  +TC ENSPK
Sbjct: 160 VFLSYATGCVNYGHNVALTCFENSPK 185


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -1

Query: 342 LQQDAPNINREINVNSIMYKL*VNLAILIHPITWCTEQEIDKQCRPSSCKRYSIQT 175
           L  D PN     +V +++Y   + L   I PIT    QEI  Q  P S    S QT
Sbjct: 766 LYADLPNSVSRRSVQTVLYHSLLTLIWAISPITPLLAQEI-WQSLPDSYLNSSYQT 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,370
Number of Sequences: 5004
Number of extensions: 67280
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)