Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30303.Seq
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    31   1.2  
06_03_1382 - 29758759-29758806,29758888-29758943,29759901-297600...    30   2.1  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    29   6.5  

>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 436 VAAFYLLVICVLEVIGCGSKRITCTLRIRRARNKFVGDGQSHHTRDHSTSGDVTAGL 606
           VAA   +++CV E  G   + +   L  R  R +F    + HH  D    G+ T G+
Sbjct: 540 VAALAFVLVCVPETKGLPIEEVEKMLEGRELRLRFWAKRRHHHGGDGDGGGEKTGGV 596


>06_03_1382 -
           29758759-29758806,29758888-29758943,29759901-29760000,
           29760107-29760220,29760807-29760854,29760959-29761021,
           29761237-29761439,29761518-29761578,29761685-29761790,
           29761920-29761987,29762344-29762418,29762507-29762589,
           29762788-29762953
          Length = 396

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 574 DLLYDGFVHRLQTYFLHGGFSGYT 503
           D+L+DG  HR++ + LH  F G++
Sbjct: 323 DILFDGQTHRIKKFVLHTNFPGHS 346


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 649 GNVLVPRAAETGLQVSQQ*RHH*YYDLLYDGFVHRLQTYFLHGGFSGYT 503
           G  L P+   T  Q  QQ ++  YY   Y G+   +Q Y  +G +  YT
Sbjct: 233 GQALAPQTP-TAEQYQQQLQYQQYYQQHYPGYNPYMQQYQQYGQYQQYT 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,230,558
Number of Sequences: 37544
Number of extensions: 489370
Number of successful extensions: 1156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)