Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30303.Seq
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2847| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_2847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 543 YKLISCTADSQGTRDTFAPASDDFQHADHQ*IKSSY*RLPSAHHFG 406
           +  +  T D   T   FAP + DF+   H  + +++   P+ H FG
Sbjct: 50  HDFVPTTHDFAPTTHDFAPTTHDFRPTTHDFVPTAHDFAPTTHDFG 95


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 236 RSRRSTSN-VDLLRASATQSKQRQEYGNHEPDASVD 132
           R +++T N  DLL+ + T+S+  +E    EPDA  D
Sbjct: 38  RKKKATINPFDLLKENGTESEDDEESSTKEPDAVHD 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,454,335
Number of Sequences: 59808
Number of extensions: 543209
Number of successful extensions: 1885
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)