Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30303.Seq
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine re...    29   4.4  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   7.8  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 475 LPARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSA 356
           +P R + +N+ +    SKRS+   FS PK  TP GR S A
Sbjct: 17  IPKRDNRMNQDKDEPTSKRSA-PMFSTPKSTTPIGRDSFA 55


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +3

Query: 603 LTWSPVSAARGTSTLPATRTALSAIRSEDFXIYWKCPFKSNNGADHP*VVLLLRHITV 776
           +T+S V++A G  T+PA     +  RS     YWK     +N  +H   V LLR I+V
Sbjct: 110 ITFSTVTSATGLPTVPAEP---NKARSSS---YWKTEASPSNNNEHETPVDLLRKISV 161


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +3

Query: 603 LTWSPVSAARGTSTLPATRTALSAIRSEDFXIYWKCPFKSNNGADHP*VVLLLRHITV 776
           +T+S V++A G  T+PA     +  RS     YWK     +N  +H   V LLR I+V
Sbjct: 110 ITFSTVTSATGLPTVPAEP---NKARSSS---YWKTEASPSNNNEHETPVDLLRKISV 161


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +3

Query: 603 LTWSPVSAARGTSTLPATRTALSAIRSEDFXIYWKCPFKSNNGADHP*VVLLLRHITV 776
           +T+S V++A G  T+PA     +  RS     YWK     +N  +H   V LLR I+V
Sbjct: 110 ITFSTVTSATGLPTVPAEP---NKARSSS---YWKTEASPSNNNEHETPVDLLRKISV 161


>AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 50 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 208 STLLVDLLLRAPSDWVYQNGQVHSQLVHYTVYVNLSVYIR 327
           S L V LL RAP  + Y+    +S+++    Y+ + +Y+R
Sbjct: 133 SFLAVQLLNRAPIKFNYEQKMFYSEILTKDQYIAIGIYLR 172


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 427 KPLVAAFYLLVICVLEVIGCGSKRIT-CTLRIRRARNKFVGDGQSHHTRDHSTSG 588
           +P+VAA  LLV+C++  +  GS  I+  +  +  +R K+ G    HH+R    +G
Sbjct: 12  QPVVAALILLVVCLVYALQSGSGTISEFSSDVLFSRAKYSG-VPVHHSRWRQDAG 65


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 427 KPLVAAFYLLVICVLEVIGCGSKRIT-CTLRIRRARNKFVGDGQSHHTRDHSTSG 588
           +P+VAA  LLV+C++  +  GS  I+  +  +  +R K+ G    HH+R    +G
Sbjct: 12  QPVVAALILLVVCLVYALQSGSGTISEFSSDVLFSRAKYSG-VPVHHSRWRQDAG 65


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 427 SKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAE 323
           S++S + Q S     + AG SS+ +NTLL T+R +
Sbjct: 673 SEQSVIGQVSPGSTTSAAGTSSARKNTLLDTKRLQ 707


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,128,629
Number of Sequences: 27780
Number of extensions: 393778
Number of successful extensions: 984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)