Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30303.Seq
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    28   9.5  
At1g47340.1 68414.m05241 F-box family protein contains F-box dom...    28   9.5  

>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +1

Query: 526 ARNKFVGD--GQSHHT-RDHSTSGDVTAGLLG--VLSRLHEAR 639
           +R +F+GD  G+   T RD +T   VTAG+LG   + R+H  R
Sbjct: 492 SRKRFLGDICGRPEATDRDAATVASVTAGILGGANIIRVHNVR 534


>At1g47340.1 68414.m05241 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 466 RRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSA 356
           R S    + L A  K +    FS+P+R TP  +SSS+
Sbjct: 80  RSSSAQPRLLFAIEKHNQWSLFSLPQRLTPYEKSSSS 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,597
Number of Sequences: 28952
Number of extensions: 366915
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)