Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30302.Seq
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.041
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.22 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.88 
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.2  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 55  MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 210
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 515 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 622
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 515 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 607
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 180 FQALTDSTVVVAGEDAVVQFLLEVLV 103
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 103 NQDLEEKLYNSILTGDYDSAVRQSLE 180
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
 Frame = -3

Query: 790 TPELNVR-KTAXSXRVQTALRSPEAFTN---------RTELPSIVEW 680
           TPE  +R +   S R QT  R+   F+N         RTE P +VEW
Sbjct: 813 TPEYTLRTRIWASLRTQTLYRTINGFSNYSRAIKLLYRTETPELVEW 859


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 68  ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 178
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,094
Number of Sequences: 5004
Number of extensions: 63857
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)