Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30302.Seq
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   4.9  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   4.9  
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    28   8.6  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -2

Query: 242 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 78
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 77  TPALAASMHIANTTR 33
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/93 (23%), Positives = 40/93 (43%)
 Frame = +1

Query: 31  LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 210
           +LV   +     S  ++ + A  ++ ++ EKLYN +   +   +      Y   GK  I 
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255

Query: 211 QNVVNNLIIDKRRNTWSTATSCGSATDRKLLES 309
            ++ N +   K   +WS A   G A   K +E+
Sbjct: 256 HSIFNGMPA-KDVVSWS-AMIAGYAESSKPMEA 286


>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 467 LEVHYLVGEQQSVLKXH--NTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTREHGXXXX 640
           LE H+   + Q+ L+    + K  +  +    +C  + +++    G+++ +T   G    
Sbjct: 448 LEEHHKRTDDQNNLEAGYWSDKATEKQRTREPSCRLSLKEKFSNWGSTSPTTHWKGQTGL 507

Query: 641 XXXXXXXVLHLQSPFNDAWELGT 709
                  VLH   PFN A E+ T
Sbjct: 508 SNPSSCTVLHEDKPFNSASEMST 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,494,197
Number of Sequences: 37544
Number of extensions: 454906
Number of successful extensions: 1217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)