Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30299.Seq
         (835 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    31   0.011
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.74 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    24   1.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.1  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 401 TSLRDPAFYQLYNRIVXYIVEFKQYLKPYTQDKLYF 508
           T++RDP FY+ ++ I     E+K  L  YT+++L +
Sbjct: 392 TAMRDPIFYRWHSYIDDIFQEYKATLPRYTENQLNY 427


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 407 LRDPAFYQLYNRIVXYIVEFKQYLKPYTQDKLYF 508
           LRDP F++ +  I     EFK  L  YT  +L +
Sbjct: 394 LRDPLFFRWHAYIDDMFQEFKATLPRYTVAQLNY 427


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 541 KLTTFFENFEFDASNSVYFSKEGIKNXHVHDV-KVRQPRLNHXPXNVNIEGDSNVASDAV 717
           K+T FFE    D        K  ++   +H + + R+ +L H   N   EG + V    +
Sbjct: 197 KVTDFFEGLILDNMQKREAEKI-VRPDLIHLLMEARKGKLKHDNSNEGGEGFATVEESEI 255

Query: 718 GQNLXGVPNT 747
           G+N   V  T
Sbjct: 256 GKNTKQVELT 265


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 637 KVRQPRLNHXPXNVNIEGDSNVASDAVGQNL 729
           KVR    N  P N N +  S    D +G+N+
Sbjct: 316 KVRAKTQNATPANNNDKRKSRGEVDGLGENM 346


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 794 ISXXLPLXCGEYPVAIVXGTPXRFWPTASLATXESPS 684
           I+  LP   G  P+ ++   P R   TAS A+  SPS
Sbjct: 184 IALVLPTQ-GASPLPLLVPIPQRTASTASSASNYSPS 219


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 637 KVRQPRLNHXPXNVNIEGDSNVASDAVGQNL 729
           KVR    N  P N N +  S    D +G+N+
Sbjct: 316 KVRAKTQNATPANNNDKRKSRGEVDGLGENM 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,826
Number of Sequences: 336
Number of extensions: 3716
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)