Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30299.Seq
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    31   0.27 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    30   0.47 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.81 
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    29   1.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   3.3  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    26   5.7  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   7.6  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    26   7.6  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 139 SLTLMRRHSFSSSKRTTLKPSDKKLISTTRKPLTSS 246
           SL++ RR    SSKR ++K SD++  S+   PL+ S
Sbjct: 10  SLSIRRRQRRGSSKRISMKESDEESDSSENHPLSES 45


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 565 FEFDASNSVYFSKEGIKNXHVHDVKVRQPRLNHXPXNVNIEGDSNVASDA 714
           F F+ S +V+ +       +V+++K+ QPR N    N  IEG +N   DA
Sbjct: 637 FSFETSPTVFQTSPEEDKENVNNIKISQPR-NSLQTNGYIEGMANNVLDA 685


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 802 PEEFPXXCPSNVESIPLPSYXGPQXDFGQQ 713
           P  FP   P  V + P PSY  P   FG Q
Sbjct: 323 PTTFPSSKPQIVNAPPAPSYFSPGSSFGAQ 352


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 572 NSKFSKNVVNLSTLTSVILTP*SKVCLECK 483
           NSK  K   N   L S++  P +KVC +CK
Sbjct: 3   NSKSKKKESNALVLKSLLREPYNKVCADCK 32


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 551 HSSRTLNSTPATACTLVKRGLRTTTSMTLRCASHD*TTXPST 676
           HSS T N T +T  T   R  RTT   T    + + +T  ST
Sbjct: 141 HSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNST 182


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -3

Query: 803 TRRISXXLPLXCGEYPVAIVXGTPXRFWPTASLATXESPSMLTLXGLWFNRGWRTLTSWT 624
           T ++   L   C    V ++ G P  +  T        P++LT   +W     +T+T+ T
Sbjct: 272 TFQLDNFLDQVCSSIDVTLMPG-PYDYSSTILPQQPLHPALLTKSKVWLGSSLQTVTNPT 330

Query: 623 WXFL 612
           W  L
Sbjct: 331 WLSL 334


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = -3

Query: 764 EYPVAIVXGTPXRFWPTASLATXESPSMLTLXGLWFNRGWRTL----TSWTWXFLIPSLL 597
           ++P A V     + W T        P++ +L   W   GW  +        W FL+ S L
Sbjct: 231 DHPFANVMVKHFKEWGTPLHGLYAYPTIESLKSRWVKNGWEYVEILDVCTFWNFLMDSKL 290

Query: 596 KY 591
           K+
Sbjct: 291 KH 292


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 275 YGEEVTKDYQRS--YEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPA 421
           + E V+ D   S  +++FA  V G +P+  + + F+    DF+     +PA
Sbjct: 53  FTESVSNDSFSSLPWQIFANSVAGNSPLQNEAWAFLMDNEDFFLPVPMNPA 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,356
Number of Sequences: 5004
Number of extensions: 63710
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)