Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30298.Seq
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   138   1e-33
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   132   8e-32
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   123   3e-29
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    30   0.46 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    28   1.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   10.0 

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  138 bits (333), Expect = 1e-33
 Identities = 75/155 (48%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
 Frame = +1

Query: 265 RSSAIKKKREIF-KRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGI 441
           + +A +KKRE+  KRAE Y  EYR  ER+ I L R+AR  GNYYVP E KL FVIRIRGI
Sbjct: 41  KKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGI 100

Query: 442 NQVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRG 621
           N + PK+    Q  RL QI   +FV+ NKAT  ML++   Y+ +G PNLK+VRE +YKRG
Sbjct: 101 NNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRG 160

Query: 622 FRQAEWTTYTNSLPNSIVEKKASINTTIFLXLKDL 726
           F +        S  N+I+E  A++     L ++DL
Sbjct: 161 FGKVNKQRIALS-DNAIIE--AALGKYSILSIEDL 192


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  132 bits (318), Expect = 8e-32
 Identities = 72/155 (46%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
 Frame = +1

Query: 265 RSSAIKKKREIF-KRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGI 441
           + SA +KKRE+  KRAE Y  EYR  ER+ I L R+AR  GNY+VP E KL FV+RIRGI
Sbjct: 40  KKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGI 99

Query: 442 NQVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRG 621
           N + PK+    Q  RL QI   +FV+ NKA   ML++   Y+ +G PN K+VRE +YKRG
Sbjct: 100 NNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRG 159

Query: 622 FRQAEWTTYTNSLPNSIVEKKASINTTIFLXLKDL 726
           F +        S  N+I+E  A++     L ++DL
Sbjct: 160 FGKVNKQRIPLS-DNAIIE--AALGKYSILSVEDL 191


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  123 bits (297), Expect = 3e-29
 Identities = 58/123 (47%), Positives = 80/123 (65%)
 Frame = +1

Query: 256 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIR 435
           + ++ +  K ++E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 436 GINQVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYK 615
           G+  + PK     +  RL +I   +FVR NKA   MLRI   Y+ +G PNL SVRE +YK
Sbjct: 97  GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYK 156

Query: 616 RGF 624
           RGF
Sbjct: 157 RGF 159


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 271 SAIKKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGN 387
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 576 IPQLKECP*VSIQTXISPS*VDNVYQFTSXQHC*EEGFHKHNHFSVXEGPSSLXILP 746
           IP +   P V   T + P  + NV  FT+ QH    G       +V  GP    ++P
Sbjct: 236 IPPVPNVPLVGATTAVPPLSIPNVLPFTAAQHF--PGMPAMPMMNVPMGPGGAPLVP 290


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 304 RAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGE 405
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,965
Number of Sequences: 5004
Number of extensions: 49398
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)