Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30298.Seq
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   139   2e-33
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  139 bits (337), Expect = 2e-33
 Identities = 69/149 (46%), Positives = 102/149 (68%)
 Frame = +1

Query: 280 KKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 459
           +KK + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 460 SXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGFRQAEW 639
                Q  RL QI   +FV+LNKAT+ +LRI   Y+AWGYPN K++ + +YKRG+ + + 
Sbjct: 101 PRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDG 160

Query: 640 TTYTNSLPNSIVEKKASINTTIFLXLKDL 726
                +  N+IVE+  S+     + L+DL
Sbjct: 161 NRVPIT-DNTIVEQ--SLGKFNIICLEDL 186


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 281 RRRGKSSRGLNSTSRNTASRNVXKSDXPDKHAIVATTTFPGKPNWHLSSESVVSTKF 451
           ++R K SR     SR  ASR   K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 728 IPGDSSPXWRKNSKLPPSXFXPXGPSKIWNQFP 826
           +P   SP  +   +LPPS +   GP  I  QFP
Sbjct: 113 MPSQYSPQ-QAQQQLPPSQYPEQGPGPIQQQFP 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,405
Number of Sequences: 27780
Number of extensions: 281616
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)