Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30298.Seq
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    27   0.28 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   4.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   4.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   4.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   4.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 702 GCVYGSLLLNNAVXK*IGIRCPLSLAKS 619
           G V+GS+ +  A+ + IGI C L LA S
Sbjct: 194 GTVFGSVAIAIAIVELIGIICALCLANS 221


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 619 GFRQAEWTTYTNSLPNSIVEKKASINTTI 705
           G  +++W   T S P + V    S  TT+
Sbjct: 86  GTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKER 345
           RS +  + RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKER 345
           RS +  + RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKER 345
           RS +  + RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKER 345
           RS +  + RE  K+  QY K Y  KE+
Sbjct: 2   RSCSRDRNREYRKKDRQYEKLYNEKEK 28


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 243 DYRLAKEAFFCHQEEEGNLQEG 308
           D+  A E+F  H E E  L+ G
Sbjct: 361 DHHTASESFMKHYENEMRLRNG 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,298
Number of Sequences: 438
Number of extensions: 3573
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)