Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30297.Seq
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    89   5e-19
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    89   9e-19
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    79   5e-16
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    29   0.99 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.3  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 48/94 (51%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +3

Query: 222 AKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRI 398
           A E     Q++RE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRI
Sbjct: 38  AAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRI 97

Query: 399 RGINQVSPKSVKFCNCLDCAK*TMVCFVRLNKAT 500
           RGIN + PK+ K    L   +     FV+ NKAT
Sbjct: 98  RGINNIPPKARKIMQLLRLIQINNGVFVKFNKAT 131



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXLQ 601
           + RK++QL RL QINNGVF        E L++ EPY+ +G PNLK+VRE +YKRGF  + 
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165

Query: 602 PXNV 613
              +
Sbjct: 166 KQRI 169


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 88.6 bits (210), Expect = 9e-19
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
 Frame = +3

Query: 207 EITGXAKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 383
           +I   A E     Q++RE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL 
Sbjct: 32  QIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLI 91

Query: 384 FVIRIRGINQVSPKSVKFCNCLDCAK*TMVCFVRLNKA 497
           FV+RIRGIN + PK+ K    L   +     FV+ NKA
Sbjct: 92  FVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKA 129



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 29/64 (45%), Positives = 41/64 (64%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXLQ 601
           + RK++QL RL QINNG+F        E L++ EPY+ +G PN K+VRE +YKRGF  + 
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 602 PXNV 613
              +
Sbjct: 165 KQRI 168


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 38/88 (43%), Positives = 53/88 (60%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  +E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK
Sbjct: 45  KNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNI 509
             K    L  ++     FVR NKA   +
Sbjct: 105 IRKVLRLLRLSRINNAVFVRNNKAVAQM 132



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 31/59 (52%), Positives = 41/59 (69%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           ++RKVL+L RL +INN VF  +     + LRI EPY+ +G PNL SVRE +YKRGF  +
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKI 162


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 222 AKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 353
           AKE FF HQ E E  ++ ++ +K +R +E DE+      + + N
Sbjct: 47  AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 371
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 308  FLDAVFLDVLFSPLEDFPFFLMAEERLFSXTC 213
            FL +V+  +  S +ED+   L  E+++FS  C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,139
Number of Sequences: 5004
Number of extensions: 47860
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)