Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30297.Seq
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    81   1e-15
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    80   2e-15
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    53   2e-07
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    29   3.2  
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056     28   7.3  
01_05_0579 + 23393632-23393734,23393765-23394513,23395958-233963...    28   7.3  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 38/88 (43%), Positives = 59/88 (67%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IF RA+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK
Sbjct: 42  ESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPK 101

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNI 509
           + K    L   +     F+++NKAT+N+
Sbjct: 102 TRKILQLLRLRQIFNGVFLKVNKATINM 129



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXLQ 601
           + RK+LQL RLRQI NGVF          LR  EPY+A+GYPNLKSVRE +YKRG+  L 
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 160

Query: 602 PXNV 613
              +
Sbjct: 161 KQRI 164


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/88 (42%), Positives = 58/88 (65%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IF RA+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK
Sbjct: 41  ESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPK 100

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNI 509
           + K    L   +     F+++NKAT+N+
Sbjct: 101 TRKILQLLRLRQIFNGVFLKVNKATINM 128



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXLQ 601
           + RK+LQL RLRQI NGVF          LR  EPY+A+GYPNLKSVRE +YKRG+  L 
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 159

Query: 602 PXNV 613
              +
Sbjct: 160 KQRI 163


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +2

Query: 425 VRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYK--RGFAXL 598
           +R++L+  RL Q+  GVF  +     + L + EP+I +G+PNLK+V++ +YK  RGF   
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163

Query: 599 QP 604
           +P
Sbjct: 164 EP 165


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 183 EERGSSH*EITGXAKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRG 350
           + RG +H EIT    +A     ++R   +  ++ V   RIKER E R   +  +RG
Sbjct: 193 KSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248


>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
          Length = 530

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 495 PYSDVQNTPLF---IWRSLNSCRTLRTSVKLG*YHGF 394
           P  D Q+T L     W  +NS   +R+S+K   +HGF
Sbjct: 409 PIEDPQSTQLDDFEFWEEINSVECVRSSIKKVVFHGF 445


>01_05_0579 +
           23393632-23393734,23393765-23394513,23395958-23396315,
           23396830-23396852
          Length = 410

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 495 PYSDVQNTPLF---IWRSLNSCRTLRTSVKLG*YHGF 394
           P  D Q+T L     W  +NS   +R+S+K   +HGF
Sbjct: 285 PIEDPQSTQLDDFEFWEEINSVECVRSSIKKVVFHGF 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,824
Number of Sequences: 37544
Number of extensions: 312812
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)