Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30297.Seq
(783 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15109-1|CAA33207.1| 239|Drosophila melanogaster ribosomal pro... 89 5e-18
AY089648-1|AAL90386.1| 252|Drosophila melanogaster RH04903p pro... 89 5e-18
AE014134-1774|AAF52868.1| 252|Drosophila melanogaster CG4897-PA... 89 5e-18
BT028802-1|ABI34183.1| 227|Drosophila melanogaster LP23547p pro... 45 1e-04
BT029578-1|ABL75637.1| 257|Drosophila melanogaster IP16905p pro... 44 2e-04
BT029555-1|ABL75615.1| 257|Drosophila melanogaster IP16805p pro... 44 2e-04
BT021218-1|AAX33366.1| 257|Drosophila melanogaster RH63749p pro... 44 2e-04
AY071314-1|AAL48936.1| 257|Drosophila melanogaster RE33833p pro... 44 2e-04
AE014134-2146|AAF53155.2| 257|Drosophila melanogaster CG5317-PA... 44 2e-04
AE014297-2937|AAS65190.1| 181|Drosophila melanogaster CG17284-P... 32 1.0
AE014297-2936|AAF55855.2| 196|Drosophila melanogaster CG17284-P... 32 1.0
AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD1916... 29 7.2
AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA, ... 29 7.2
>X15109-1|CAA33207.1| 239|Drosophila melanogaster ribosomal
protein protein.
Length = 239
Score = 89.4 bits (212), Expect = 5e-18
Identities = 42/56 (75%), Positives = 44/56 (78%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGF 589
+VRKVLQLFRLRQINNGVF LRIAEPYI WGYPNLKSVRE +YKRGF
Sbjct: 94 KVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGF 149
Score = 82.6 bits (195), Expect = 5e-16
Identities = 43/95 (45%), Positives = 59/95 (62%)
Frame = +3
Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 404
K+A ++E RAE+Y EY E+ EI+L R A+ R +YVP EAKLAFV+RIRG
Sbjct: 28 KKAAVIALRKKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG 87
Query: 405 INQVSPKSVKFCNCLDCAK*TMVCFVRLNKATVNI 509
IN+V+PK K + F++LNKAT+N+
Sbjct: 88 INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINM 122
>AY089648-1|AAL90386.1| 252|Drosophila melanogaster RH04903p
protein.
Length = 252
Score = 89.4 bits (212), Expect = 5e-18
Identities = 42/56 (75%), Positives = 44/56 (78%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGF 589
+VRKVLQLFRLRQINNGVF LRIAEPYI WGYPNLKSVRE +YKRGF
Sbjct: 107 KVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGF 162
Score = 82.6 bits (195), Expect = 5e-16
Identities = 43/95 (45%), Positives = 59/95 (62%)
Frame = +3
Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 404
K+A ++E RAE+Y EY E+ EI+L R A+ R +YVP EAKLAFV+RIRG
Sbjct: 41 KKAAVIALRKKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG 100
Query: 405 INQVSPKSVKFCNCLDCAK*TMVCFVRLNKATVNI 509
IN+V+PK K + F++LNKAT+N+
Sbjct: 101 INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINM 135
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1
Query: 115 PVKGKEDSKKLPAVPESVLK 174
PV K +KKLPAVPES LK
Sbjct: 4 PVVKKPAAKKLPAVPESKLK 23
>AE014134-1774|AAF52868.1| 252|Drosophila melanogaster CG4897-PA
protein.
Length = 252
Score = 89.4 bits (212), Expect = 5e-18
Identities = 42/56 (75%), Positives = 44/56 (78%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGF 589
+VRKVLQLFRLRQINNGVF LRIAEPYI WGYPNLKSVRE +YKRGF
Sbjct: 107 KVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGF 162
Score = 82.6 bits (195), Expect = 5e-16
Identities = 43/95 (45%), Positives = 59/95 (62%)
Frame = +3
Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 404
K+A ++E RAE+Y EY E+ EI+L R A+ R +YVP EAKLAFV+RIRG
Sbjct: 41 KKAAVIALRKKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG 100
Query: 405 INQVSPKSVKFCNCLDCAK*TMVCFVRLNKATVNI 509
IN+V+PK K + F++LNKAT+N+
Sbjct: 101 INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINM 135
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1
Query: 115 PVKGKEDSKKLPAVPESVLK 174
PV K +KKLPAVPES LK
Sbjct: 4 PVVKKPAAKKLPAVPESKLK 23
>BT028802-1|ABI34183.1| 227|Drosophila melanogaster LP23547p
protein.
Length = 227
Score = 45.2 bits (102), Expect = 1e-04
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -3
Query: 589 ESTFVYXLTDTL*VGVSPSNVRLGDT*IFTVALFRRTKHTIVYLAQSKQLQNFTDFG 419
EST V L L +G++P +V LGD L + +HT+V L Q++QLQN D G
Sbjct: 35 ESTLVDQLPHGLQIGIAPGDVGLGDAQHVDGGLVQLDEHTVVDLPQTEQLQNLADLG 91
Score = 32.7 bits (71), Expect = 0.58
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 416 NLVDTTDSDDKCQFGFPGNVVVATIACLSG*SDFITF-LDAVFLDVL 279
+LVDT D+DDK QFG G+V + + + D F LD + L +L
Sbjct: 93 HLVDTADTDDKGQFGLGGHVELVALLGQATQLDLALFRLDVLILVLL 139
>BT029578-1|ABL75637.1| 257|Drosophila melanogaster IP16905p
protein.
Length = 257
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 434 VLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
+ + R+ +N VF + LR+ EP++ +G P+L S+RE V+K+GFA +
Sbjct: 116 IFRTLRMGSRHNAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARI 170
>BT029555-1|ABL75615.1| 257|Drosophila melanogaster IP16805p
protein.
Length = 257
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 434 VLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
+ + R+ +N VF + LR+ EP++ +G P+L S+RE V+K+GFA +
Sbjct: 116 IFRTLRMGSRHNAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARI 170
>BT021218-1|AAX33366.1| 257|Drosophila melanogaster RH63749p
protein.
Length = 257
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 434 VLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
+ + R+ +N VF + LR+ EP++ +G P+L S+RE V+K+GFA +
Sbjct: 116 IFRTLRMGSRHNAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARI 170
>AY071314-1|AAL48936.1| 257|Drosophila melanogaster RE33833p
protein.
Length = 257
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 434 VLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
+ + R+ +N VF + LR+ EP++ +G P+L S+RE V+K+GFA +
Sbjct: 116 IFRTLRMGSRHNAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARI 170
>AE014134-2146|AAF53155.2| 257|Drosophila melanogaster CG5317-PA
protein.
Length = 257
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 434 VLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
+ + R+ +N VF + LR+ EP++ +G P+L S+RE V+K+GFA +
Sbjct: 116 IFRTLRMGSRHNAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARI 170
>AE014297-2937|AAS65190.1| 181|Drosophila melanogaster CG17284-PB,
isoform B protein.
Length = 181
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 223 LKRRSSAIKKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESV 402
+++ AI KS G NST+ N RN +KSD HA +A +F + N L S
Sbjct: 25 VQKNDKAINSCRKSLLGNNSTNSNGEVRN-LKSDKVALHACIAECSF--RTNGFLLSNGT 81
Query: 403 VSTK 414
V+T+
Sbjct: 82 VNTQ 85
>AE014297-2936|AAF55855.2| 196|Drosophila melanogaster CG17284-PA,
isoform A protein.
Length = 196
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 223 LKRRSSAIKKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESV 402
+++ AI KS G NST+ N RN +KSD HA +A +F + N L S
Sbjct: 40 VQKNDKAINSCRKSLLGNNSTNSNGEVRN-LKSDKVALHACIAECSF--RTNGFLLSNGT 96
Query: 403 VSTK 414
V+T+
Sbjct: 97 VNTQ 100
>AF160940-1|AAD46880.1| 1260|Drosophila melanogaster BcDNA.LD19168
protein.
Length = 1260
Score = 29.1 bits (62), Expect = 7.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 232 RSSAIKKKGKSSRGLNSTSRNTA-SRNVMKSD*PDKHAIVATTTFP 366
RSS K+GKS+ STSR + SRN S+ +H++ + T P
Sbjct: 42 RSSGSGKRGKSNSRRRSTSRGRSDSRNTSPSNTRRRHSLSRSLTPP 87
>AE014297-55|AAF52146.1| 1260|Drosophila melanogaster CG9776-PA,
isoform A protein.
Length = 1260
Score = 29.1 bits (62), Expect = 7.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 232 RSSAIKKKGKSSRGLNSTSRNTA-SRNVMKSD*PDKHAIVATTTFP 366
RSS K+GKS+ STSR + SRN S+ +H++ + T P
Sbjct: 42 RSSGSGKRGKSNSRRRSTSRGRSDSRNTSPSNTRRRHSLSRSLTPP 87
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,116,391
Number of Sequences: 53049
Number of extensions: 515938
Number of successful extensions: 1100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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