Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30297.Seq
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)              88   7e-18
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)              88   7e-18
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...    86   2e-17
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...    86   2e-17
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...    86   2e-17
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)              86   3e-17
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...    47   1e-05
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    29   3.5  

>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
 Frame = +3

Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
           IFKRAEQY KEY  K+ + IRL R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K  
Sbjct: 49  IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 108

Query: 441 NCLDCAK*TMVCFVRLNKATVNIY--VSPSLT 530
             L   +     F+++NKATVN+   V P +T
Sbjct: 109 QLLRLRQIFNGVFLKVNKATVNMLRRVEPYVT 140



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           + +K+LQL RLRQI NGVF          LR  EPY+ +GYPNLKSV+E +YKRG+  L
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKL 161


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
 Frame = +3

Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
           IFKRAEQY KEY  K+ + IRL R+A+ +G +YV  EAKL F+IRIRGIN + PK+ K  
Sbjct: 44  IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 103

Query: 441 NCLDCAK*TMVCFVRLNKATVNIY--VSPSLT 530
             L   +     F+++NKATVN+   V P +T
Sbjct: 104 QLLRLRQIFNGVFLKVNKATVNMLRRVEPYVT 135



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           + +K+LQL RLRQI NGVF          LR  EPY+ +GYPNLKSV+E +YKRG+  L
Sbjct: 98  KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKL 156


>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           ++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 41  EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNIY--VSPSLT 530
           + K    L   +     F+++NKAT+N+   V P +T
Sbjct: 101 TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVT 137



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 33/59 (55%), Positives = 40/59 (67%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           + +K+LQL RLRQI NGVF          LR  EPY+ +GYPNLKSV+E +YKRGF  L
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKL 158


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           ++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 41  EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNIY--VSPSLT 530
           + K    L   +     F+++NKAT+N+   V P +T
Sbjct: 101 TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVT 137



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 33/59 (55%), Positives = 40/59 (67%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           + +K+LQL RLRQI NGVF          LR  EPY+ +GYPNLKSV+E +YKRGF  L
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKL 158


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           ++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 41  EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNIY--VSPSLT 530
           + K    L   +     F+++NKAT+N+   V P +T
Sbjct: 101 TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVT 137



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 33/59 (55%), Positives = 40/59 (67%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           + +K+LQL RLRQI NGVF          LR  EPY+ +GYPNLKSV+E +YKRGF  L
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKL 158


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IFKRAEQY KEY  KE++ I L R+A+ +G +YV  EAKL F+IRIRGIN + PK
Sbjct: 39  ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98

Query: 426 SVKFCNCLDCAK*TMVCFVRLNKATVNIY--VSPSLT 530
           + K    L   +     F+++NKAT+N+   V P +T
Sbjct: 99  TKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVT 135



 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 31/59 (52%), Positives = 40/59 (67%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXL 598
           + +K+LQL RLRQI NGVF          LR  EPY+ +G+PNLKSV+E +YKRG+  L
Sbjct: 98  KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKL 156


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +3

Query: 267 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 446
           KR E +V E+R KE D IR+ ++ +   +   P ++ L F+IRI+G N + PK+ +  N 
Sbjct: 50  KRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNN 109

Query: 447 L 449
           L
Sbjct: 110 L 110



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 36/60 (60%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFCTSE*GYCEYLRIAEPYIAWGYPNLKSVREXVYKRGFAXLQ 601
           + +++L   +L+ +  GVF  +     + L   +PY+ +GYPN KSV++ +YK+G   ++
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIE 161


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +1

Query: 271 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
           G + T R+  +R  + SD   K+  V+ T   GK   HLS E  VS  F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,522
Number of Sequences: 28952
Number of extensions: 252514
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)