Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30296.Seq
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKI 297
           LA     +G +CI++  +   DEKI
Sbjct: 113 LAMAAAVRGYKCIIVMPEKMSDEKI 137


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 220 CVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 95
           CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 75 LLLSAILFKIYC*NLRTIIIFIT 7
          +LLS+  F++    L TI+IF+T
Sbjct: 1  MLLSSAWFEVIAAVLLTILIFVT 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,165
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)