Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30294.Seq
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0870 + 28895594-28895870,28896017-28896354                       29   1.0  
10_01_0184 + 2064135-2064150,2064438-2064485,2065541-2065806,206...    27   5.6  
07_03_0751 - 21239549-21240559                                         27   5.6  
01_06_1365 - 36690267-36692222                                         27   7.3  

>04_04_0870 + 28895594-28895870,28896017-28896354
          Length = 204

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 110 HRSDRE-KPKRSTKSNERR-RSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRK 283
           +RS  E +P R  +++ ++ R  R+V+   K  + R V R R  SR   E SAAVAP   
Sbjct: 103 YRSSMEPEPGRCRRTDGKKWRCSRDVVPGHKYCE-RHVHRGRGRSRKPMEASAAVAPTYL 161

Query: 284 P 286
           P
Sbjct: 162 P 162


>10_01_0184 +
           2064135-2064150,2064438-2064485,2065541-2065806,
           2065986-2066054,2066429-2066980,2067433-2067453
          Length = 323

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
 Frame = +2

Query: 140 STKSNERRRSPRE--VLSFSK-----IWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXX 298
           +TK   + R PRE  VL   +      W+ R        ++ A  G ++V   R+ CG  
Sbjct: 20  ATKRKRKGREPREEEVLLARRRTGDGAWRLRSKTTGDGGAKAA--GKSSVVGARRMCGSG 77

Query: 299 XXXXXXXKHRLALERXKLRADREKIEREKNELLRL 403
                  K RL      LRA R ++ RE  E+ R+
Sbjct: 78  VTLWGEEKARLQWTEGSLRA-RSEVWRESGEIDRV 111


>07_03_0751 - 21239549-21240559
          Length = 336

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVA 271
           ++ KP  ST S+ RR +P  VLS++       V      +R  REG  A A
Sbjct: 89  EKRKPTTSTSSSSRRLAPAFVLSYA---AKAAVFAALVSARCYREGMPAYA 136


>01_06_1365 - 36690267-36692222
          Length = 651

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 188 FSKIW-KXRXVXRXREXSRXAREGSAAVAPPRKP 286
           FSK W K R   + ++ +  ++  +AA+ PP KP
Sbjct: 249 FSKKWQKWRRKQKLKKEAAVSKAAAAAMPPPEKP 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,069,074
Number of Sequences: 37544
Number of extensions: 52576
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)