Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30294.Seq
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_12702| Best HMM Match : FeoB_N (HMM E-Value=5.5)                    27   5.7  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      27   5.7  
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_2944| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   10.0 

>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 23/93 (24%), Positives = 33/93 (35%)
 Frame = +2

Query: 113 RSDREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCG 292
           R  REK ++     ER R  RE     +  + R   R R      RE        R    
Sbjct: 590 RDAREKERQDRIRRERERIARERALERERERERERERERRRLEYMREQRRRQEEERARLQ 649

Query: 293 XXXXXXXXXKHRLALERXKLRADREKIEREKNE 391
                    +    L   + R +RE++ERE+ E
Sbjct: 650 RELERRRELERLRVLRERREREERERLERERRE 682


>SB_12702| Best HMM Match : FeoB_N (HMM E-Value=5.5)
          Length = 267

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 122 REKPKRSTKSNERRRSPREVLSFSKIWKXR 211
           R  P+  T  + R+  P EVL  +KIW+ R
Sbjct: 228 RRIPRDDTLKDRRKVCPEEVLLKTKIWQSR 257


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/93 (21%), Positives = 41/93 (44%)
 Frame = +2

Query: 116 SDREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGX 295
           ++R   +R   + ER+R+ +E    +K  +   V + RE     +E    +   ++    
Sbjct: 194 TERVNKERERVNKERKRANKETERVNK--ETERVNKERERVNKKKE---RLNKEKEQLNK 248

Query: 296 XXXXXXXXKHRLALERXKLRADREKIEREKNEL 394
                   + RL  ER ++  +RE++ +EK  L
Sbjct: 249 EKEQLNKERKRLNKERKRVNKERERLNKEKERL 281


>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/93 (21%), Positives = 41/93 (44%)
 Frame = +2

Query: 116 SDREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGX 295
           ++R   +R   + ER+R+ +E    +K  +   V + RE     +E    +   ++    
Sbjct: 453 TERVNKERERVNKERKRANKETERVNK--ETERVNKERERVNKKKE---RLNKEKEQLNK 507

Query: 296 XXXXXXXXKHRLALERXKLRADREKIEREKNEL 394
                   + RL  ER ++  +RE++ +EK  L
Sbjct: 508 EKEQLNKERKRLNKERKRVNKERERLNKEKERL 540


>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 122 REKPKRSTKSNERRRSPREVLSFSKIWKXR 211
           R  P+  T  + R+  P EVL  +KIW+ R
Sbjct: 547 RRIPRDDTLKDRRKVCPEEVLLKTKIWQSR 576


>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 122 REKPKRSTKSNERRRSPREVLSFSKIWKXR 211
           R  P+  T  + R+  P EVL  +KIW+ R
Sbjct: 365 RRIPRDDTLKDRRKVCPEEVLLKTKIWQSR 394


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 125 EKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGS 259
           EK   S ++ +R++S +  LSFS+  K +     ++    AREG+
Sbjct: 460 EKRTESEEAPKRKKSLKRRLSFSRKNKAKKTEEKQDEEGEAREGT 504


>SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 110 HRSDREKPKRSTKSNERRRSPREVLSFSKIWKXR 211
           HR +R+K K  + +   +  PR ++   K WK +
Sbjct: 286 HRVERKKAKSRSLTQSEKERPRTIVCKLKDWKTK 319


>SB_2944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 131 PKRSTKSNERRRSPREVLSFSKIWKXR 211
           P+  T  + R+  P EVL  +KIW+ R
Sbjct: 123 PRDDTLKDRRKVCPEEVLLKTKIWQSR 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,806,761
Number of Sequences: 59808
Number of extensions: 57140
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)