Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30294.Seq
         (403 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001582-1|AAN71337.1|  977|Drosophila melanogaster RE24907p pro...    50   9e-07
AY061541-1|AAL29089.1|  392|Drosophila melanogaster LP03039p pro...    50   9e-07
AE014297-3637|ABC66187.1|  392|Drosophila melanogaster CG6995-PC...    50   9e-07
AE014297-3636|AAF56343.3|  666|Drosophila melanogaster CG6995-PA...    50   9e-07
AE014297-3635|AAN14018.2|  928|Drosophila melanogaster CG6995-PB...    50   9e-07

>BT001582-1|AAN71337.1|  977|Drosophila melanogaster RE24907p
           protein.
          Length = 977

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 37/95 (38%), Positives = 47/95 (49%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXX 298
           DRE  +R     ER R  RE+LS+ KI + R   R RE  R  RE        R+     
Sbjct: 553 DREIQQRQ---RERERRQREMLSYQKIREERERQRLRERERELREEERRRREARE----- 604

Query: 299 XXXXXXXKHRLALERXKLRADREKIEREKNELLRL 403
                  + RL  ER KL  +RE++EREK ELLR+
Sbjct: 605 --RQRIEEERLQEERRKLAVERERLEREKAELLRM 637


>AY061541-1|AAL29089.1|  392|Drosophila melanogaster LP03039p
           protein.
          Length = 392

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 37/95 (38%), Positives = 47/95 (49%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXX 298
           DRE  +R     ER R  RE+LS+ KI + R   R RE  R  RE        R+     
Sbjct: 242 DREIQQRQ---RERERRQREMLSYQKIREERERQRLRERERELREEERRRREARE----- 293

Query: 299 XXXXXXXKHRLALERXKLRADREKIEREKNELLRL 403
                  + RL  ER KL  +RE++EREK ELLR+
Sbjct: 294 --RQRIEEERLQEERRKLAVERERLEREKAELLRM 326


>AE014297-3637|ABC66187.1|  392|Drosophila melanogaster CG6995-PC,
           isoform C protein.
          Length = 392

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 37/95 (38%), Positives = 47/95 (49%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXX 298
           DRE  +R     ER R  RE+LS+ KI + R   R RE  R  RE        R+     
Sbjct: 242 DREIQQRQ---RERERRQREMLSYQKIREERERQRLRERERELREEERRRREARE----- 293

Query: 299 XXXXXXXKHRLALERXKLRADREKIEREKNELLRL 403
                  + RL  ER KL  +RE++EREK ELLR+
Sbjct: 294 --RQRIEEERLQEERRKLAVERERLEREKAELLRM 326


>AE014297-3636|AAF56343.3|  666|Drosophila melanogaster CG6995-PA,
           isoform A protein.
          Length = 666

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 37/95 (38%), Positives = 47/95 (49%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXX 298
           DRE  +R     ER R  RE+LS+ KI + R   R RE  R  RE        R+     
Sbjct: 242 DREIQQRQ---RERERRQREMLSYQKIREERERQRLRERERELREEERRRREARE----- 293

Query: 299 XXXXXXXKHRLALERXKLRADREKIEREKNELLRL 403
                  + RL  ER KL  +RE++EREK ELLR+
Sbjct: 294 --RQRIEEERLQEERRKLAVERERLEREKAELLRM 326


>AE014297-3635|AAN14018.2|  928|Drosophila melanogaster CG6995-PB,
           isoform B protein.
          Length = 928

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 37/95 (38%), Positives = 47/95 (49%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXX 298
           DRE  +R     ER R  RE+LS+ KI + R   R RE  R  RE        R+     
Sbjct: 504 DREIQQRQ---RERERRQREMLSYQKIREERERQRLRERERELREEERRRREARE----- 555

Query: 299 XXXXXXXKHRLALERXKLRADREKIEREKNELLRL 403
                  + RL  ER KL  +RE++EREK ELLR+
Sbjct: 556 --RQRIEEERLQEERRKLAVERERLEREKAELLRM 588


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,324,983
Number of Sequences: 53049
Number of extensions: 85094
Number of successful extensions: 358
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)