Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30294.Seq
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    29   0.94 
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    27   6.7  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    26   8.8  
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    26   8.8  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    26   8.8  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 26/88 (29%), Positives = 35/88 (39%)
 Frame = +2

Query: 125 EKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRKPCGXXXX 304
           EK  + TK N RRR+     S  +  K R   R R      R+ S      R P      
Sbjct: 237 EKFSKKTKLNFRRRTEDVDRSKDRSLKRRE-ERSRSRQDRERDRSRGGEKSRSPRKSHQK 295

Query: 305 XXXXXKHRLALERXKLRADREKIEREKN 388
                K R   +R + R DRE  +RE++
Sbjct: 296 SVDRDKTRSDKDRSRSRKDREDRDRERS 323


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 113  RSDREKPKRSTKSNERRRSPREVLSFSK-IWKXRXVXRXREXSRXAREGSAAVAPPRK 283
            RS   K  RS  +  RRRS     S S+  ++ R   R R  SR       A  PP++
Sbjct: 1523 RSREHKRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSREAAPPPQQ 1580



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 320  KHRLALERXKLRADREKIEREKNE 391
            K +LA+++ KLR  +E ++RE  E
Sbjct: 1068 KEKLAIDKEKLRLKKEALQRELEE 1091


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 113 RSDREKPKRSTKSNERRRSPREVLSFSK-IWKXRXVXRXREXSRXAREGSAAVAPPRK 283
           RS   K  RS  +  RRRS     S S+  ++ R   R R  SR       A  PP++
Sbjct: 148 RSREHKRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSREAAPPPQQ 205


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 113 RSDREKPKRSTKSNERRRSPREVLSFSKIWKXRXVXRXREXSRXAREGSAAVAPPRK 283
           R+DR++P R + S  RRR P       +  + R   R R  +   R  +A  A P K
Sbjct: 78  RADRDRPMRPSPSPPRRRRPSPSPP-RRDRRDRSGSRQRRRASPRRSPAARSASPAK 133


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3b protein.
          Length = 1271

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 320  KHRLALERXKLRADREKIEREKNE 391
            K +LA+++ KLR  +E ++RE  E
Sbjct: 1068 KEKLAIDKEKLRLKKEALQRELEE 1091


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 110 HRSDREKPKRSTKSNERRRSP 172
           +R DR   KRS +S ERRRSP
Sbjct: 169 YRDDRRDRKRS-RSRERRRSP 188


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 110 HRSDREKPKRSTKSNERRRSP 172
           +R DR   KRS +S ERRRSP
Sbjct: 295 YRDDRRDRKRS-RSRERRRSP 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,348,349
Number of Sequences: 27780
Number of extensions: 45193
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)