Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30293.Seq
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   120   3e-28
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   119   4e-28
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   8.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  120 bits (288), Expect = 3e-28
 Identities = 68/170 (40%), Positives = 92/170 (54%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           MKLN+SYPA G  +++      +    + K  G+     SV     G          +  
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
            P         RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 412 IPGLTDGNVPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKE 561
           IPGLTD  VP+RLGP+   +        +   +R++V++       EGK+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  119 bits (287), Expect = 4e-28
 Identities = 67/170 (39%), Positives = 92/170 (54%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           MKLN+SYPA G  +++      +    + K  G+     SV     G          +  
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
            P         RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 412 IPGLTDGNVPRRLGPQTCFQNP*AVQP*QRR*LRRYVVKTRASQAXEGKE 561
           IPGLTD  VP+RLGP+   +        +   +R++V++       EGK+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 39  IDRSHEVKRFVPGNGHARSCS-KWWTSTSFVSFTK 140
           ID S        G+GHARS S  WW     V F K
Sbjct: 94  IDNSLLAPPLSNGSGHARSRSHAWWLPYIVVEFDK 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,302
Number of Sequences: 5004
Number of extensions: 51572
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)