Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30293.Seq
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    87   1e-17
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    87   1e-17
02_02_0237 - 8150491-8151066                                           28   7.1  
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139...    28   9.3  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           MK N++ P TG  + +      +      K   +     ++    +G          +  
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 405
            P +    T+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 406 QEIPGLTDGNVPRRLGPQ 459
            ++PGLTD   PR  GP+
Sbjct: 121 NDLPGLTDTEKPRMRGPK 138



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
 Frame = +2

Query: 86  CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTA 265
           CQK  E+ D+ KLR FY+ R+  EV  D L +E+KG V ++ GG D QGFPMK GV  + 
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSG 71

Query: 266 VFVF*CQRATHV-TDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEMY- 439
                  R T         + E   + V   +     S + L+  +     L  L +   
Sbjct: 72  RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEK 131

Query: 440 PAV*VPKRASKIRKLFNLSKEDD 508
           P +  PKRASKIRKLFNL+K+DD
Sbjct: 132 PRMRGPKRASKIRKLFNLAKDDD 154


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           MK N++ P TG  + +      +      K   +     ++    +G          +  
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 405
            P +    T  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 406 QEIPGLTDGNVPRRLGPQ 459
            ++PGLTD   PR  GP+
Sbjct: 121 NDLPGLTDTEKPRMRGPK 138



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
 Frame = +2

Query: 86  CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTA 265
           CQK  E+ D+ KLR F++ R+  EV  D L +E+KG V ++ GG D QGFPMK GV    
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAG 71

Query: 266 VFVF*CQRATHV-TDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEMY- 439
                  R T         + E   + V   +     S + L+  +     L  L +   
Sbjct: 72  RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEK 131

Query: 440 PAV*VPKRASKIRKLFNLSKEDD 508
           P +  PKRASKIRKLFNLSK+DD
Sbjct: 132 PRMRGPKRASKIRKLFNLSKDDD 154


>02_02_0237 - 8150491-8151066
          Length = 191

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 236 PMKXGVRQTAVFVF*CQRATHVTDRAAME 322
           PMK  VR++A + F  QRA+ +  R  ME
Sbjct: 104 PMKVTVRESATYWFVNQRASRIISRTPME 132


>04_04_0909 -
           29312875-29313135,29313235-29313556,29313676-29313923,
           29314032-29314259
          Length = 352

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 27/89 (30%), Positives = 40/89 (44%)
 Frame = +3

Query: 252 SDKQPCSSSDVKGPLMLQTAPRWREKT*ISSWMYC*RQSLGLGSCYCAQGCPGNSWID*W 431
           S++  C S D K  + L T+   R +  +S+W    R  L L  CY     P  S+ID W
Sbjct: 103 SERLKCYSDDPKKAIRLSTSFNVRTEK-VSNW----RDFLRL-HCY-----PLESFIDQW 151

Query: 432 KCTPPSRSPNVLPKSVSCSTLAKKMITSL 518
              PPS    V   S     LA +++ ++
Sbjct: 152 PSNPPSFRQVVGTYSREARALALRLLEAI 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,256,901
Number of Sequences: 37544
Number of extensions: 385330
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)