Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30293.Seq
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   114   7e-26

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  114 bits (274), Expect = 7e-26
 Identities = 60/136 (44%), Positives = 80/136 (58%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           M+LN +YPATG+ +        +      K   +     ++    +G          +  
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 411
            P +    TN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 412 IPGLTDGNVPRRLGPQ 459
           I GLTD  +PR+LGP+
Sbjct: 121 IEGLTDSVLPRKLGPK 136



 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 62/151 (41%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
 Frame = +2

Query: 89  QKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTAV 268
           QK FEV +E KLR+F+E RM  EV  D L DEWKG V+R+ GGND QGFPMK G+     
Sbjct: 13  QKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGR 72

Query: 269 FVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LME-MYPA 445
                ++      R     E   + V   +   + S L L+  +     ++ L + + P 
Sbjct: 73  VRLLLKKGQSCY-RERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPR 131

Query: 446 V*VPKRASKIRKLFNLSKEDD---YVVMSSK 529
              PKRASKIRKLFNL+K DD   YV+   K
Sbjct: 132 KLGPKRASKIRKLFNLTKHDDVTKYVITHDK 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,732,273
Number of Sequences: 27780
Number of extensions: 304606
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)