Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30293.Seq
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    87   1e-17
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              86   3e-17
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p...    28   7.8  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 57/143 (39%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
 Frame = +2

Query: 86  CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTA 265
           CQK  E+ D+ KLR FY+ R+  EV  D L +E+KG V ++ GG D QGFPMK GV    
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPG 71

Query: 266 VFVF*CQRATHV-TDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEMY- 439
                  R T           E   + V   +     S L L+  +     L  L +   
Sbjct: 72  RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEK 131

Query: 440 PAV*VPKRASKIRKLFNLSKEDD 508
           P +  PKRASKIRKLFNL KEDD
Sbjct: 132 PRMRGPKRASKIRKLFNLKKEDD 154



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           MK NV+ P TG  + +      +      K   +     ++    +G     +    +  
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 405
            P +    T  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 406 QEIPGLTDGNVPRRLGPQ 459
            ++PGLTD   PR  GP+
Sbjct: 121 NDLPGLTDTEKPRMRGPK 138


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
 Frame = +1

Query: 52  MKLNVSYPATGMPEVVRSGGRAQASYLLRKXHGRRSRX*SVXR*MEGLXTSCRWRQRQXR 231
           MK NV+ P TG  + +      +      K   +     ++    +G          +  
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 232 IPXETXRPTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 405
            P +    T  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 406 QEIPGLTDGNVPRRLGPQ 459
            ++PGLTD   PR  GP+
Sbjct: 121 SDLPGLTDTEKPRMRGPK 138



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 62/164 (37%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
 Frame = +2

Query: 86  CQKLFEVVDEHKLRIFYEXRMGAEVXADQLXDEWKGXVLRVAGGNDXQGFPMKXGVRQTA 265
           CQK  E+ D+ KLR F++ R+  EV  D L +E+KG V ++ GG D QGFPMK GV    
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPG 71

Query: 266 VFVF*CQRATHV-TDRAAMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*LMEMY- 439
                  R T           E   + V   +     S L L+  +     L  L +   
Sbjct: 72  RVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEK 131

Query: 440 PAV*VPKRASKIRKLFNLSKEDDY--VVMSSKRVLPKPXKGKKM 565
           P +  PKRASKIRKLFNL KEDD    V + +R      KGKK+
Sbjct: 132 PRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTN-KKGKKV 174


>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 580

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 110 PPLRTTSGMPVAGYETFNFMTAVNP 36
           PPLR T G+PV G+    F+ A NP
Sbjct: 514 PPLRNTVGVPVNGWAVIRFI-ADNP 537


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,439
Number of Sequences: 28952
Number of extensions: 288970
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)