Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30292.Seq
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   4.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   5.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS 291
           KGQ+  PN G+ +N           RR  F M+ S+ S
Sbjct: 317 KGQFRDPNTGFMTNTPLEVFTITPGRRYRFRMINSFAS 354


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KGQYLMPNIGYGSNKKTRHMLPNGFRRS*FTMLKSWKS 291
           KGQ+  PN G+ +N           RR  F M+ S+ S
Sbjct: 317 KGQFRDPNTGFMTNTPLEVFTITPGRRYRFRMINSFAS 354


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 445 NYIYSFSWERRRAAAFVTLMLSCWA 371
           N+ + F  ++     FVT  L CW+
Sbjct: 528 NFCFGFITKQLIFMIFVTYQLYCWS 552


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 110 RYDKLKRNWRKPRGIDNR 163
           +++ L  +W  PRG D+R
Sbjct: 631 QFNGLDVDWEYPRGADDR 648


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,516
Number of Sequences: 336
Number of extensions: 2015
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)