Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30292.Seq
         (476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...    97   4e-20
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...    97   4e-20
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...    97   4e-20
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...    97   4e-20
BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.        84   2e-16
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      51   2e-06
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      49   7e-06
BC094811-1|AAH94811.1|  602|Homo sapiens ADAMTSL4 protein protein.     29   8.3  
BC071852-1|AAH71852.1|  602|Homo sapiens ADAMTSL4 protein protein.     29   8.3  
BC027478-1|AAH27478.1|  424|Homo sapiens ADAMTSL4 protein protein.     29   8.3  
AL356356-13|CAI15500.2| 1074|Homo sapiens ADAMTS-like 4 protein.       29   8.3  
AF217974-1|AAG17217.1|  237|Homo sapiens unknown protein.              29   8.3  

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 47/65 (72%), Positives = 52/65 (80%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 419
           P    K LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRVTN  ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 420 SQENE 434
           S+ENE
Sbjct: 131 SEENE 135



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +2

Query: 38  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVR
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVR 46



 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
           +RFKGQ LMPNIGYGSNKKT+HMLP+GFR+
Sbjct: 47  RRFKGQILMPNIGYGSNKKTKHMLPSGFRK 76


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 47/65 (72%), Positives = 52/65 (80%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 419
           P    K LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRVTN  ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 420 SQENE 434
           S+ENE
Sbjct: 131 SEENE 135



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +2

Query: 38  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVR
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVR 46



 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
           +RFKGQ LMPNIGYGSNKKT+HMLP+GFR+
Sbjct: 47  RRFKGQILMPNIGYGSNKKTKHMLPSGFRK 76


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 47/65 (72%), Positives = 52/65 (80%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 419
           P    K LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRVTN  ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 420 SQENE 434
           S+ENE
Sbjct: 131 SEENE 135



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +2

Query: 38  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVR
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVR 46



 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
           +RFKGQ LMPNIGYGSNKKT+HMLP+GFR+
Sbjct: 47  RRFKGQILMPNIGYGSNKKTKHMLPSGFRK 76


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 47/65 (72%), Positives = 52/65 (80%)
 Frame = +3

Query: 240 PKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 419
           P    K LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVERA QL+IRVTN  ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 420 SQENE 434
           S+ENE
Sbjct: 131 SEENE 135



 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +2

Query: 38  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVR
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVR 46



 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 25/30 (83%), Positives = 29/30 (96%)
 Frame = +1

Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
           +RFKGQ LMPNIGYGSNKKT+HMLP+GFR+
Sbjct: 47  RRFKGQILMPNIGYGSNKKTKHMLPSGFRK 76


>BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.
          Length = 107

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
 Frame = +3

Query: 114 MTNLRGIGVNLEVLTTESAAVQGSILDAQHWLRF--QQEDPSYAPKWIPKVLVHNVKELE 287
           M+ LR  G N EVLTT    ++G    +   + +   ++     P    K LVHNVKELE
Sbjct: 1   MSKLRVTGGNTEVLTT--GFIEGLRARSMPNIGYGRNKKTKHILPSGFWKFLVHNVKELE 58

Query: 288 ILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 434
           +L++ N+ YC EI H VSSK  K I+ERA Q+ IRVTNA A L S E+E
Sbjct: 59  VLLVSNKSYCVEITHDVSSKNCKAILERAAQVVIRVTNANASLHSAESE 107


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +2

Query: 38  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKR 130
           A+R + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 49.2 bits (112), Expect = 7e-06
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +2

Query: 38  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 127
           A+R + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


>BC094811-1|AAH94811.1|  602|Homo sapiens ADAMTSL4 protein protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 309 SCFASSRFPAL*HCELGPSESIWEHMTG 226
           SC   SR P +  C LGP E  W   TG
Sbjct: 418 SCPTGSRPPDMRACSLGPCERTWRWYTG 445


>BC071852-1|AAH71852.1|  602|Homo sapiens ADAMTSL4 protein protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 309 SCFASSRFPAL*HCELGPSESIWEHMTG 226
           SC   SR P +  C LGP E  W   TG
Sbjct: 418 SCPTGSRPPDMRACSLGPCERTWRWYTG 445


>BC027478-1|AAH27478.1|  424|Homo sapiens ADAMTSL4 protein protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 309 SCFASSRFPAL*HCELGPSESIWEHMTG 226
           SC   SR P +  C LGP E  W   TG
Sbjct: 240 SCPTGSRPPDMRACSLGPCERTWRWYTG 267


>AL356356-13|CAI15500.2| 1074|Homo sapiens ADAMTS-like 4 protein.
          Length = 1074

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 309 SCFASSRFPAL*HCELGPSESIWEHMTG 226
           SC   SR P +  C LGP E  W   TG
Sbjct: 890 SCPTGSRPPDMRACSLGPCERTWRWYTG 917


>AF217974-1|AAG17217.1|  237|Homo sapiens unknown protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 309 SCFASSRFPAL*HCELGPSESIWEHMTG 226
           SC   SR P +  C LGP E  W   TG
Sbjct: 53  SCPTGSRPPDMRACSLGPCERTWRWYTG 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,090,141
Number of Sequences: 237096
Number of extensions: 1352497
Number of successful extensions: 4243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4242
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)