Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30291.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    35   6e-04
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    31   0.012
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.7  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
 Frame = -2

Query: 415 PSRLMLPXGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGY 275
           P  ++LP GT  G+P  LFV +  Y           T  + + F      + PD +  GY
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGY 641

Query: 274 PFDR 263
           PFDR
Sbjct: 642 PFDR 645


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
 Frame = -2

Query: 415 PSRLMLPXGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGY 275
           P  +++P GT +G   QLFV +  Y+    +                   + PD +  GY
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGY 642

Query: 274 PFDR 263
           PFDR
Sbjct: 643 PFDR 646


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 510 IFKEALSRWPKSTXSWT 460
           +F +  SRWP     WT
Sbjct: 108 LFSQVASRWPLFLNEWT 124


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 668  GSGKHPILKS 697
            G GKHP+LK+
Sbjct: 2673 GCGKHPLLKT 2682


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 230 MFFKKVLVYHEGELFPYLFNI 168
           ++F +++VY    + P L+N+
Sbjct: 333 LYFCRIMVYLNSAINPILYNL 353


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 300 FRTTNHSVIHSIAPFSSVLQTT*HVLQE 217
           + T   S+ HS+A  + +L +  H+LQ+
Sbjct: 211 YSTDYSSLTHSLAASNHLLSSGQHLLQD 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,092
Number of Sequences: 336
Number of extensions: 2644
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)