Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30289.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 108 6e-25
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 108 6e-25
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 4.1
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 5.4
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 7.1
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 9.4
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.4
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 108 bits (260), Expect = 6e-25
Identities = 54/106 (50%), Positives = 76/106 (71%), Gaps = 5/106 (4%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 G-----HCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
+ K+++G V K SVGCTV+G+ HD+
Sbjct: 111 EVARTMRFKSLAKELSGTV-----KEILGTAFSVGCTVDGKNPHDV 151
Score = 99.5 bits (237), Expect = 4e-22
Identities = 58/135 (42%), Positives = 74/135 (54%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT+ + R
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIMRNRS 462
+ + K K + L +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 463 MARYLSGSVKEILGT 507
+A+ LSG+VKEILGT
Sbjct: 121 LAKELSGTVKEILGT 135
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 108 bits (260), Expect = 6e-25
Identities = 54/106 (50%), Positives = 76/106 (71%), Gaps = 5/106 (4%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I
Sbjct: 51 KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEII 110
Query: 432 G-----HCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
+ K+++G V K SVGCTV+G+ HD+
Sbjct: 111 EVARTMRFKSLAKELSGTV-----KEILGTAFSVGCTVDGKNPHDV 151
Score = 99.5 bits (237), Expect = 4e-22
Identities = 58/135 (42%), Positives = 74/135 (54%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT+ + R
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIMRNRS 462
+ + K K + L +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 463 MARYLSGSVKEILGT 507
+A+ LSG+VKEILGT
Sbjct: 121 LAKELSGTVKEILGT 135
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 351 ALKEPPRDRKKQKN-IKHNGNISLEDVIGHCEDHEKQINGPV 473
A+ +PP +KK+KN K N E +G+ D E+Q +G +
Sbjct: 30 AITKPPASKKKRKNRKKKKNNGPSEQFVGN-NDLEEQRSGSI 70
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 420 EDVIGHCEDHEKQINGPVPFWLSKRDSWH 506
E+++G C DHEK +WL DS H
Sbjct: 345 EEILGLCCDHEKN-----TYWLYTTDSLH 368
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 276
+FT+ R LK + CR N + GLS C +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 269 ETLPVLVALAMSSPTFLGDRPRGPILGAKDDVAP 168
E +PV ++ SP L D R +L ++AP
Sbjct: 1017 ELIPVFASVLTGSPEQLNDELRSELLSMVKEIAP 1050
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 348 RALKEPPRDRKKQKNIKHNGNISLEDVIGHCEDHEKQIN 464
R K P DR++Q K + I D + H H +++
Sbjct: 50 RKTKNPESDRRRQSRKKKSTQIQASDEMKHRRHHVHKVH 88
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 378 KKQKNIKHNGNISLEDVIGHCEDHE 452
K +N K N++L+D++ H ED +
Sbjct: 887 KATENQKKLENMNLDDILSHAEDRD 911
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 182 DDVAPTSPPTHRKFTILI 129
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,429
Number of Sequences: 5004
Number of extensions: 55431
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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