Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30289.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 113 2e-25
02_05_0416 + 28791512-28792012 112 2e-25
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 31 1.0
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 29 4.2
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 4.2
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 7.4
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 7.4
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 27 9.7
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242 27 9.7
>04_04_1026 + 30214437-30214937
Length = 166
Score = 113 bits (271), Expect = 2e-25
Identities = 58/101 (57%), Positives = 71/101 (70%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
+ K SVGCTV+G+ DL
Sbjct: 112 EIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152
Score = 95.5 bits (227), Expect = 3e-20
Identities = 61/139 (43%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTG----RVS 270
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T RV+
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 271 RSLCS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIM 450
L + VK+ K S + + IA+IM
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDV---IEIARIM 117
Query: 451 RNRSMARYLSGSVKEILGT 507
RNRSMA+ ++G+VKEILGT
Sbjct: 118 RNRSMAKEMAGTVKEILGT 136
>02_05_0416 + 28791512-28792012
Length = 166
Score = 112 bits (270), Expect = 2e-25
Identities = 58/101 (57%), Positives = 71/101 (70%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
KDWKGL++TV+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI
Sbjct: 52 KDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVI 111
Query: 432 GHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
+ K SVGCTV+G+ DL
Sbjct: 112 EIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152
Score = 91.9 bits (218), Expect = 4e-19
Identities = 59/139 (42%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTG----RVS 270
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T RV+
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 271 RSLCS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIM 450
L + VK+ K S + + IA++M
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDV---IEIARVM 117
Query: 451 RNRSMARYLSGSVKEILGT 507
R RSMA+ ++G+VKEILGT
Sbjct: 118 RPRSMAKEMAGTVKEILGT 136
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 240 CQGHKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 386
C W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 27 CAAQGYWYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 256 SLWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 146
S+W C H P+ E D E R GP L R I+
Sbjct: 1181 SMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 142 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTG 261
N +C G E G S AP++ PLG+ PK G+ IA + G
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIAPSLALG 771
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 100 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 228
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 120 VKLRGHFVDYLVQLYTIITLNPNGWVWIPQ 31
V LR H L L + +P W+WI Q
Sbjct: 81 VSLRSHLASVLQSLSQVRPRSPASWIWISQ 110
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/71 (22%), Positives = 29/71 (40%)
Frame = -2
Query: 446 IFAMPDYIFKGDVAVVFDIFLLFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHSDLE 267
++ P+Y GD+ + D++ + RLL G G + + L L S
Sbjct: 537 VYIDPEYAISGDLTPLSDVYSFGIILLRLLTGRSGFGLLKDVQRAVAKGCLQAILDSSAG 596
Query: 266 TLPVLVALAMS 234
P++ A +S
Sbjct: 597 DWPLMHAEQLS 607
>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
Length = 509
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 403 TATSPLKM*SGIAKIMRNRSMARYLSGSVKEIL 501
T TS M G++++MRN S+ + L ++E+L
Sbjct: 308 TGTSASAMEWGMSELMRNPSVMKKLQAEIREVL 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,637
Number of Sequences: 37544
Number of extensions: 405054
Number of successful extensions: 1169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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