Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30289.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_27703| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 29 3.3
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43) 28 7.5
SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092) 28 7.5
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 9.9
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 118 bits (284), Expect = 4e-27
Identities = 67/135 (49%), Positives = 79/135 (58%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT+ + +
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60
Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIMRNRS 462
+ + K K L + +AK+MR RS
Sbjct: 61 CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRS 120
Query: 463 MARYLSGSVKEILGT 507
MAR+LSG+VKEILGT
Sbjct: 121 MARHLSGTVKEILGT 135
Score = 116 bits (280), Expect = 1e-26
Identities = 60/108 (55%), Positives = 75/108 (69%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
+DWKGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV
Sbjct: 51 QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVT 110
Query: 432 GHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDLIVTSTAG 575
+ + K QSVGCTV+G HD+I +G
Sbjct: 111 NVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSG 158
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -2
Query: 377 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGD 213
+++ + GSD+K CC G + LG+ + +HSD++ P+L LA F+ +
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDE 167
Query: 212 R 210
R
Sbjct: 168 R 168
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 31.5 bits (68), Expect = 0.61
Identities = 23/61 (37%), Positives = 28/61 (45%)
Frame = -2
Query: 350 SDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGDRPRGPILGAKDDVA 171
SD+K C R LS L ++ TL L S TF +P GP+ G K DVA
Sbjct: 924 SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978
Query: 170 P 168
P
Sbjct: 979 P 979
>SB_27703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 434 PDYIFKGDVAVVFDIFLLFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHSDLETLPV 255
PDY F G + + FD F T S GC +SY+ ++ H +++TLPV
Sbjct: 61 PDYAFSGQITL-FD----FKATSLTSSWSKAGGCELIRDSYIPWNLARHWTHGNVDTLPV 115
Query: 254 LV 249
+
Sbjct: 116 FM 117
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 401
++ ++ RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
Length = 779
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 399 HNGNISLEDVIGHCEDHEKQINGPVPFWLSKRDSWHRQSV 518
H G ++ D + + +D IN P P + SKR H Q V
Sbjct: 719 HKGKLTYRDFLDNFQDRRSIINPPTPDYPSKR---HNQPV 755
>SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)
Length = 565
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 384 QKNIKHNGNISLEDVIGHCEDHEKQINGPVPFWLSKR 494
++N K I LED H + H+ INGP+ +L +
Sbjct: 301 KRNPKEVVRIYLEDSGSHTKGHDDLINGPIKDYLGDK 337
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 121 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 231
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,493,123
Number of Sequences: 59808
Number of extensions: 429324
Number of successful extensions: 1001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -