Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30289.Seq
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 32 0.30
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 30 1.2
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 30 1.2
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 30 1.2
Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical pr... 27 8.7
U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protei... 27 8.7
AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine r... 27 8.7
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 116 bits (278), Expect = 2e-26
Identities = 66/137 (48%), Positives = 81/137 (59%), Gaps = 2/137 (1%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT+ + + C
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 283 S*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*S--GIAKIMRN 456
+ +K+ N L + + IA+IMR
Sbjct: 61 --KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRP 118
Query: 457 RSMARYLSGSVKEILGT 507
RSMA+ L G+VKEILGT
Sbjct: 119 RSMAKKLEGTVKEILGT 135
Score = 106 bits (254), Expect = 2e-23
Identities = 51/108 (47%), Positives = 72/108 (66%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
+DWKGLK+T +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I
Sbjct: 51 QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTII 110
Query: 432 GHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDLIVTSTAG 575
+ K QSVGCT++G+ HD+I + G
Sbjct: 111 KIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANG 158
>Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical
protein Y49E10.4 protein.
Length = 436
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 117 KLRGHFVDYLVQLYTIITLNPNGWVWIPQGYRLNVQR 7
K R +D L +L TI GWVW+ G + NVQR
Sbjct: 305 KCRKQKIDMLNELATIFKKRSFGWVWMEGGAQENVQR 341
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 448 MRNRSMARYLSGSVKEILGT 507
MR RSMA+ L G+VKEILGT
Sbjct: 1 MRPRSMAKKLEGTVKEILGT 20
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 510 QSVGCTVEGRXAHDLIVTSTAG 575
QSVGCT++G+ HD+I + G
Sbjct: 22 QSVGCTIDGQHPHDIIESIANG 43
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222
+F + R L+ GSD + G NNS + V NC H+D T+P L + S F
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55
>Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical
protein M01G12.6 protein.
Length = 419
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 200 VLLVCLLKRWVMTLPR--PQGLEGSQDHCAADSS 295
+L++CLLKRW M L PQ + D+ + S
Sbjct: 180 ILMICLLKRWKMNLVEKFPQNITKHMDYTPVNIS 213
>Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical
protein F11A6.1b protein.
Length = 760
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306
+R GG+V + LA K G L P GD D K +R+ R +RSL + Q + ++
Sbjct: 64 VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123
>Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical
protein F11A6.1a protein.
Length = 692
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306
+R GG+V + LA K G L P GD D K +R+ R +RSL + Q + ++
Sbjct: 64 VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123
>U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protein
protein.
Length = 692
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306
+R GG+V + LA K G L P GD D K +R+ R +RSL + Q + ++
Sbjct: 64 VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123
>AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine
receptor, class x protein12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Frame = -1
Query: 129 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 37
F+W GH + Y + + +P W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,202
Number of Sequences: 27780
Number of extensions: 324920
Number of successful extensions: 944
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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