Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30289.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 110 7e-25
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 109 2e-24
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 108 3e-24
At3g57760.1 68416.m06434 protein kinase family protein contains ... 28 4.7
At5g61730.1 68418.m07746 ABC transporter family protein contains... 28 6.1
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 28 6.1
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 110 bits (265), Expect = 7e-25
Identities = 57/101 (56%), Positives = 70/101 (69%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111
Query: 432 GHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
+ + K SVGCTV+G+ DL
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDL 152
Score = 91.9 bits (218), Expect = 3e-19
Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 4/139 (2%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT----RTGRVS 270
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T + RV+
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 271 RSLCS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIM 450
L + VK+ K + + + IAKIM
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDV---IEIAKIM 117
Query: 451 RNRSMARYLSGSVKEILGT 507
R RS+A+ LSG+VKEILGT
Sbjct: 118 RPRSIAKELSGTVKEILGT 136
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 109 bits (262), Expect = 2e-24
Identities = 60/106 (56%), Positives = 74/106 (69%), Gaps = 5/106 (4%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDV- 428
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111
Query: 429 ----IGHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
I K+++G V L SVGCTV+G+ DL
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT-----CVSVGCTVDGKDPKDL 152
Score = 90.6 bits (215), Expect = 8e-19
Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT----RTGRVS 270
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T + RV+
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 271 RSLCS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIM 450
L + VK+ K + + + + IA+IM
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDV---TEIARIM 117
Query: 451 RNRSMARYLSGSVKEILGT 507
R RS+A+ LSG+V+EILGT
Sbjct: 118 RPRSIAKELSGTVREILGT 136
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 108 bits (260), Expect = 3e-24
Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 5/106 (4%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDV- 428
K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV
Sbjct: 52 KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111
Query: 429 ----IGHCEDHEKQINGPVPFWLSKRDSWHRQSVGCTVEGRXAHDL 554
I K+++G V L SVGCTV+G+ D+
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT-----CVSVGCTVDGKDPKDI 152
Score = 90.6 bits (215), Expect = 8e-19
Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT----RTGRVS 270
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T + RV+
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 271 RSLCS*QFKTDKXXXXXXXXXXXXXXXXXXXXXVTVKSRKISNTTATSPLKM*SGIAKIM 450
L + VK+ K + + + + IA+IM
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDV---TEIARIM 117
Query: 451 RNRSMARYLSGSVKEILGT 507
R RS+A+ LSG+V+EILGT
Sbjct: 118 RPRSIAKELSGTVREILGT 136
>At3g57760.1 68416.m06434 protein kinase family protein contains
similarity to protein kinases
Length = 378
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3
Query: 369 RDRKKQKNIKHNGNISLEDVIGHCE 443
R +K+++N+K NG + L+++I C+
Sbjct: 10 RAKKRKRNVKENGEVVLKELIECCD 34
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 379 KSRKISNTTATSPLKM*SGIAKIMRNRSMARYLSGSVKEILGTDSQLDVLWRA 537
K+ IS T +P+ G AKI N + ++++++G Q D+LW A
Sbjct: 562 KTTTISCLTGINPVT--GGDAKIYGNSIRSSVGMSNIRKMIGVCPQFDILWDA 612
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNI 413
HK K L + V+ + V+PS A ++ A KK K+ K N N+
Sbjct: 172 HKKLKQLDCLTSVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNV 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,040
Number of Sequences: 28952
Number of extensions: 309830
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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