Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30288.Seq
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    47   3e-06
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.24 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.42 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   6.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   6.8  

>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
 Frame = +2

Query: 263 YPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSLENKYDENEE 442
           +PL +    + +++++  PEF+  ++P++DW  L      +G+   LP    +  D+++E
Sbjct: 23  FPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNY-SLPDEKPDLVDDSDE 81

Query: 443 -FLKKAHKXXXXXXXXXGHLTCPNLEDNFRFLKEFLIWLLNEAEV 574
             LK  H          G + C N    +   +     LL+E+E+
Sbjct: 82  VLLKSLHNVLLETEITEGKMVCGNCGHVYPIFEGIPNMLLSESEI 126


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLPRSL 415
           F  +FI  V+ +++WE+L +     G  +GL R+L
Sbjct: 100 FQEQFIENVVKEINWEILAILISLSGIENGLVRNL 134


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 492 PSSTSTSNKTL*AFFKNSSFSSYLFSKDLGRPSLWPMLSAATHNTSQS-SFGITRLINSG 316
           PS +STS+ T  +    S+ SSYL S  +   S  P  S+++  TS S S       +S 
Sbjct: 187 PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSS 246

Query: 315 LKSTSLTLMS 286
             STS +L S
Sbjct: 247 SSSTSSSLSS 256



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = -1

Query: 570 SASFNSHIRNSFRNRKLSSRFGQVKCPSSTSTSNKTL*AFFKNSSFSSYLFSKDLGRPSL 391
           S+S +S    +  +  +SS       P+STS++  +  +   +SSFSS L S  +   S 
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISS--SSSSSSSFSSTLSSSSMSSSSS 331

Query: 390 W---PMLSAATHNTSQSS 346
           +   P  S++T ++S SS
Sbjct: 332 FSSSPTSSSSTISSSSSS 349


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 311 FNPEFISRVIPKLDWEVLWVAADSIGHSDGLP 406
           F+PE  +  +  LDW   W  A S G    LP
Sbjct: 577 FSPEVRNGFLKTLDWLSQWACARSYGLGTRLP 608


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 515 PDLDKSSVPLQ---LPPLTRLYELSSKTLRFHHTYFLKILADHHCGRCYQRPPIILPNPA 345
           P+LDK    L    +  L RL    S + R  +T  +  +A HHC    +   ++     
Sbjct: 192 PELDKLRHSLYNWWVSILRRLQSNISTSERITYTKAILAIAKHHCWNKVEHSALLYLEHQ 251

Query: 344 LVLHD 330
           L+L+D
Sbjct: 252 LILYD 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,504
Number of Sequences: 5004
Number of extensions: 62473
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)