Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30288.Seq
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1314 - 25721137-25721538                                         57   2e-08
11_06_0128 - 20389375-20389781,20389988-20392787                       29   4.1  
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    29   4.1  
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   5.4  
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212...    28   7.1  
09_04_0564 + 18565583-18566449,18569662-18570123                       28   9.4  

>07_03_1314 - 25721137-25721538
          Length = 133

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
 Frame = +2

Query: 254 LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPR-------- 409
           +TGYPL +       KE + NPEF+  ++PK+DW  L  A  ++G  + LP         
Sbjct: 17  VTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQALGLPELLPEAPPTDAEL 76

Query: 410 SLENKYDENEEFLKKAHKXXXXXXXXXGHLTCPNLEDNFRFLKEFLIWLLNEAEVQ 577
           S E    +    L++ H+         G L CP+ +  F   +     LL+E EV+
Sbjct: 77  SAEGAAADEGSALRRLHRALLEIHIEEGALVCPDTDRCFPISRGVPNMLLHEDEVR 132


>11_06_0128 - 20389375-20389781,20389988-20392787
          Length = 1068

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 558 NSHIRNSFRNRKLSSRFGQVKCPSSTSTSNKTL*A----FFKNSSFSSYL 421
           N +++N+F N  +SS  GQ+K   S   SN  L      F  N S  SYL
Sbjct: 583 NVYLQNNFLNGTISSALGQLKGLESLDLSNNKLSGQIPRFLGNISMLSYL 632


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 325 KFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVLCNF 179
           + R K  FFN+    +N   + + T     + ++ W ISF+I+ V+  F
Sbjct: 190 ELRRKGSFFNWYTFMINSGSLLASTVLVWLQDNVGWGISFVIVVVVMAF 238


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 353 WEVLWVAADSIGHSDGLP 406
           W++ WVA  +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593


>05_01_0274 -
           2119122-2119775,2121457-2121570,2121895-2122203,
           2123743-2123904,2124046-2124129,2124315-2124500
          Length = 502

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 497 SVPLQLPPLTRLYELSSKTLRFHHTYFLKIL--ADHHCGRCYQRPPIILPNPALVL 336
           ++ L  PP T     ++  L+ H  Y    L  + +  G    RPP++LP P+ V+
Sbjct: 373 TLDLTQPPPTTTTTAAAAMLQLHRPYAFSSLPFSMYGAGGGSHRPPVVLPPPSSVV 428


>09_04_0564 + 18565583-18566449,18569662-18570123
          Length = 442

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 422 YFLKILADHHCGRCYQRPPIILPNPA 345
           Y+   L +HH   C+  PP   P+PA
Sbjct: 5   YYASFLKNHHRRYCFSTPPSPSPSPA 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,653
Number of Sequences: 37544
Number of extensions: 334708
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)