Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30285.Seq
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   2e-07
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  41   4e-04

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +3

Query: 276 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 419
           NVP+          N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 802 NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 73  KKRQISHKRIVTREYTVNLHKRLHGVGFKKR 165
           KK + +   +VTREYT+NLHKR+HG+    R
Sbjct: 776 KKGRSAINEVVTREYTINLHKRIHGMNVPYR 806


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +3

Query: 276 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 401
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,995
Number of Sequences: 59808
Number of extensions: 253049
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)