Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30284.Seq
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)                     33   0.17 
SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)                    33   0.30 
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  

>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 561 KVNPGPVSDNAFIY*LCIFKEDSLPMAEIYKLLDQGKIPTDMFNSSD 421
           ++NPGPV+DN  I  +C++      +   Y++L  G  P D+   +D
Sbjct: 437 ELNPGPVTDNNNIEDICLYSNGDFTLR--YRMLRHGLTPLDVGGGAD 481


>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
          Length = 477

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 561 KVNPGPVSDNAFIY*LCIFKEDSLPMAEIYKLLDQGKIPTDMFNSSDTMP 412
           ++NPGPV+DN  I  +C++      +   Y++L  G  P D+    + +P
Sbjct: 24  ELNPGPVTDNNNIEDICLYSNGDFTLR--YRMLRHGLTPLDVGRGVNILP 71


>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
          Length = 728

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 561 KVNPGPVSDNAFIY*LCIFKEDSLPMAEIYKLLDQGKIPTDMFNSSD 421
           ++NPGPV+DN  I  +C++      +   Y++L  G  P D+    D
Sbjct: 497 ELNPGPVTDNNNIEDICLYSNGDFMLR--YRMLRHGLTPLDVGGGGD 541


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 561  KVNPGPVSDNAFIY*LCIFKEDSLPMAEIYKLLDQGKIPTDM 436
            ++NPGPV+DN  I  +C++      +   Y++L  G  P D+
Sbjct: 5742 ELNPGPVTDNNNIEDICLYSNGDFTLR--YRMLRHGLTPLDV 5781


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 414 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 271
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,442
Number of Sequences: 59808
Number of extensions: 365232
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)