Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30284.Seq
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    28   7.4  
AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z72513-2|CAA96670.1|  562|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF318610-1|AAK01098.1|  396|Caenorhabditis elegans ionotropic gl...    27   9.8  
AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate rec...    27   9.8  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 339 EPTPK-ESEPFKSVVPDNKPFGYPFDRPV 256
           +PTPK +SEPF   +P +KP   PF  P+
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPM 35


>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 210 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 82
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 210 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 82
           W++    YS  Y   L ++ I+R+  + ++ SK    I +YNS
Sbjct: 74  WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116


>AF024500-4|AAB70365.1|  335|Caenorhabditis elegans Hypothetical
           protein K06H6.6 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 208 VYHEGELFPYLFNIPHYTPDK 146
           VY  G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322


>Z72513-2|CAA96670.1|  562|Caenorhabditis elegans Hypothetical
           protein T04F3.3 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 600 NWMNFY-ELDWFVQKVNPGPVSDNAFIY*LCIFKEDSLPMAEIYKLLDQ 457
           +W++ Y E   F+  V P P+S++   +  C+F  +SL +  + +LLD+
Sbjct: 118 SWIDGYRETRKFI--VAPSPMSESVAQFWRCVFDRNSLIVVTLCELLDE 164


>Z68882-17|CAI79150.1|  111|Caenorhabditis elegans Hypothetical
           protein C47E12.14 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 120 KSKRTLTITVYNSRISCEYVKTVANV 43
           KSK TL   ++ +R+S ++VKT  NV
Sbjct: 58  KSKFTLAQPIFKNRMSADFVKTHKNV 83


>AF318610-1|AAK01098.1|  396|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-6 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 557 LTLAQSQITRSSTDFASSKKTLYRWPKSTSSWT 459
           L L  S + R     +SS  T + WP S S WT
Sbjct: 97  LQLGISMLMRQPNPKSSSSLTRFLWPLSASVWT 129


>AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform a protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 557 LTLAQSQITRSSTDFASSKKTLYRWPKSTSSWT 459
           L L  S + R     +SS  T + WP S S WT
Sbjct: 509 LQLGISMLMRQPNPKSSSSLTRFLWPLSASVWT 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,330
Number of Sequences: 27780
Number of extensions: 275755
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)