Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30282.Seq
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    30   0.37 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.0  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 530  DVVDPRPTKGVHKEMRVKKEALYHLSAFFSVAFSR 634
            DV DP+    VH  + + +EAL   S FFS  F R
Sbjct: 1020 DVNDPKVETVVHPVLTLTREALLRQSEFFSPIFKR 1054


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 479 VKVADEAVKESTQRRIRDVVDPRPTKGVHKEMRVKKEALYHLSAFFSVAF 628
           +K+ D  + ++ Q+       P P K    +  +   +LYH S F ++ F
Sbjct: 726 LKIIDNCIDKNMQKSQEGFQGPSPFKADENDEDIFIISLYHSSLFLNLKF 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,533
Number of Sequences: 5004
Number of extensions: 35117
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)