Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30282.Seq
(699 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 119 4e-27
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 119 4e-27
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 112 4e-25
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 40 0.003
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 40 0.003
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 40 0.003
AE014296-347|AAF47561.2| 1314|Drosophila melanogaster CG13921-PA... 31 1.5
BT029040-1|ABJ16973.1| 460|Drosophila melanogaster IP03738p pro... 29 6.1
BT001721-1|AAN71476.1| 1120|Drosophila melanogaster RE69223p pro... 29 8.0
AE014297-2244|AAF55345.1| 473|Drosophila melanogaster CG14905-P... 29 8.0
AE014296-348|AAS64933.1| 1120|Drosophila melanogaster CG13921-PB... 29 8.0
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 119 bits (286), Expect = 4e-27
Identities = 55/73 (75%), Positives = 63/73 (86%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV
Sbjct: 77 FINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPV 136
Query: 421 KGSPYAADKRRGY 459
+GS +AADKRR +
Sbjct: 137 RGSQFAADKRRNF 149
Score = 52.0 bits (119), Expect = 8e-07
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTPRK 268
VIA KV+GTVKWFNVKSGYGFINR R+
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTRE 85
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 119 bits (286), Expect = 4e-27
Identities = 55/73 (75%), Positives = 63/73 (86%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV
Sbjct: 77 FINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPV 136
Query: 421 KGSPYAADKRRGY 459
+GS +AADKRR +
Sbjct: 137 RGSQFAADKRRNF 149
Score = 52.0 bits (119), Expect = 8e-07
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTPRK 268
VIA KV+GTVKWFNVKSGYGFINR R+
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTRE 85
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 112 bits (270), Expect = 4e-25
Identities = 54/73 (73%), Positives = 62/73 (84%)
Frame = +1
Query: 241 FHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 420
F ++DT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV
Sbjct: 78 FINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPV 136
Query: 421 KGSPYAADKRRGY 459
+GS +AADKRR +
Sbjct: 137 RGSQFAADKRRNF 149
Score = 52.0 bits (119), Expect = 8e-07
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 182 VIAEKVSGTVKWFNVKSGYGFINRMTPRK 268
VIA KV+GTVKWFNVKSGYGFINR R+
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTRE 86
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +1
Query: 199 IGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 378
+G C+ + F +D ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRG 95
Query: 379 FEAAGVTGPGGEPVKGSPY 435
EA V+ G +GS Y
Sbjct: 96 LEATRVSSRHGGSCQGSTY 114
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +1
Query: 199 IGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 378
+G C+ + F +D ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRG 95
Query: 379 FEAAGVTGPGGEPVKGSPY 435
EA V+ G +GS Y
Sbjct: 96 LEATRVSSRHGGSCQGSTY 114
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +1
Query: 199 IGHCEMVQRQEWIWFHQQDDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 378
+G C+ + F +D ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRG 95
Query: 379 FEAAGVTGPGGEPVKGSPY 435
EA V+ G +GS Y
Sbjct: 96 LEATRVSSRHGGSCQGSTY 114
>AE014296-347|AAF47561.2| 1314|Drosophila melanogaster CG13921-PA,
isoform A protein.
Length = 1314
Score = 31.1 bits (67), Expect = 1.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -1
Query: 363 NHGKLHRLSVADRAHSLTWVVTGDGSLMHKHIFLGVILLMKPYPLLTLNHFTVPDTFSAM 184
+ G HR + + + ++ G S + +FLGV L+ Y + N TVP TF
Sbjct: 476 HRGSAHRHGAGIKKYVVWCLICGGFSCLLGVLFLGVYFLLHSYTITVGNFETVP-TFVPA 534
Query: 183 TCFCLT 166
T LT
Sbjct: 535 TLLILT 540
>BT029040-1|ABJ16973.1| 460|Drosophila melanogaster IP03738p
protein.
Length = 460
Score = 29.1 bits (62), Expect = 6.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 292 IARNNPRKAVRSVGDGEAVEFAVVAGE-KGFEAAGVTGPGGEPVKGSPYAAD 444
+AR P DG V AV+A + G AG T G PV G+ AAD
Sbjct: 202 VARAVPATDGNGAPDGVPVAGAVLATDGNGAPVAGATDGNGAPVAGAVPAAD 253
>BT001721-1|AAN71476.1| 1120|Drosophila melanogaster RE69223p
protein.
Length = 1120
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 348 HRLSVADRAHSLTWVVTGDGSLMHKHIFLGVILLMKPYPLLTLNHFTVPDTFSAMTCFCL 169
HR + + + ++ G S + +FLGV L+ Y + N TVP TF T L
Sbjct: 287 HRHGAGIKKYVVWCLICGGFSCLLGVLFLGVYFLLHSYTITVGNFETVP-TFVPATLLIL 345
Query: 168 T 166
T
Sbjct: 346 T 346
>AE014297-2244|AAF55345.1| 473|Drosophila melanogaster CG14905-PA
protein.
Length = 473
Score = 28.7 bits (61), Expect = 8.0
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +2
Query: 494 EAVKESTQRRIRDVVDPRPTKGVHKEMRVKKEALYHLSA 610
E + +STQ ++D ++ + ++ KE+++K EAL +L+A
Sbjct: 330 EVLNDSTQE-LQDEIERQKSEQTEKELKLKTEALDYLNA 367
>AE014296-348|AAS64933.1| 1120|Drosophila melanogaster CG13921-PB,
isoform B protein.
Length = 1120
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 348 HRLSVADRAHSLTWVVTGDGSLMHKHIFLGVILLMKPYPLLTLNHFTVPDTFSAMTCFCL 169
HR + + + ++ G S + +FLGV L+ Y + N TVP TF T L
Sbjct: 287 HRHGAGIKKYVVWCLICGGFSCLLGVLFLGVYFLLHSYTITVGNFETVP-TFVPATLLIL 345
Query: 168 T 166
T
Sbjct: 346 T 346
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,228,840
Number of Sequences: 53049
Number of extensions: 447474
Number of successful extensions: 1535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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