Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30280.Seq
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 175 2e-43
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 175 2e-43
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 175 2e-43
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 175 2e-43
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 175 2e-43
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 174 3e-43
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 54 6e-07
AB065574-1|BAC05807.1| 337|Homo sapiens seven transmembrane hel... 33 1.5
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 175 bits (425), Expect = 2e-43
Identities = 83/146 (56%), Positives = 98/146 (67%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F G K + + A
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCIVA 177
Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
PDTVIHC+GEPIKRE+E E+LN VGY
Sbjct: 178 PDTVIHCEGEPIKREDEEESLNEVGY 203
Score = 101 bits (241), Expect = 4e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 242 RKETV 256
R+E V
Sbjct: 64 RREAV 68
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 175 bits (425), Expect = 2e-43
Identities = 83/146 (56%), Positives = 98/146 (67%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F G K + + A
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
PDTVIHC+GEPIKRE+E E+LN VGY
Sbjct: 178 PDTVIHCEGEPIKREDEEESLNEVGY 203
Score = 101 bits (241), Expect = 4e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 242 RKETV 256
R+E V
Sbjct: 64 RREAV 68
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 175 bits (425), Expect = 2e-43
Identities = 83/146 (56%), Positives = 98/146 (67%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F G K + + A
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
PDTVIHC+GEPIKRE+E E+LN VGY
Sbjct: 178 PDTVIHCEGEPIKREDEEESLNEVGY 203
Score = 101 bits (241), Expect = 4e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 242 RKETV 256
R+E V
Sbjct: 64 RREAV 68
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 175 bits (425), Expect = 2e-43
Identities = 83/146 (56%), Positives = 98/146 (67%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F G K + + A
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
PDTVIHC+GEPIKRE+E E+LN VGY
Sbjct: 178 PDTVIHCEGEPIKREDEEESLNEVGY 203
Score = 101 bits (241), Expect = 4e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 242 RKETV 256
R+E V
Sbjct: 64 RREAV 68
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 175 bits (425), Expect = 2e-43
Identities = 83/146 (56%), Positives = 98/146 (67%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI + D F G K + + A
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
PDTVIHC+GEPIKRE+E E+LN VGY
Sbjct: 178 PDTVIHCEGEPIKREDEEESLNEVGY 203
Score = 101 bits (241), Expect = 4e-21
Identities = 48/65 (73%), Positives = 61/65 (93%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 242 RKETV 256
R+E V
Sbjct: 64 RREAV 68
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 174 bits (423), Expect = 3e-43
Identities = 81/135 (60%), Positives = 93/135 (68%)
Frame = +1
Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
CIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TG
Sbjct: 7 CIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITG 66
Query: 436 NLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWAPDTVIHCDGEP 615
NLFEVYLKPYF+EAYRPI + D F G K + + APDTVIHC+GEP
Sbjct: 67 NLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEP 126
Query: 616 IKREEEXEALNAVGY 660
IKRE+E E+LN VGY
Sbjct: 127 IKREDEEESLNEVGY 141
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 54.0 bits (124), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 580 APDTVIHCDGEPIKREEEXEALNAVGY 660
APDTVIHC+GEPIKRE+E E+LN VGY
Sbjct: 15 APDTVIHCEGEPIKREDEEESLNEVGY 41
Score = 33.5 bits (73), Expect = 0.83
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 537 FKVVETDPSPFCIV 578
FKVVETDPSP+CIV
Sbjct: 1 FKVVETDPSPYCIV 14
>AB065574-1|BAC05807.1| 337|Homo sapiens seven transmembrane helix
receptor protein.
Length = 337
Score = 32.7 bits (71), Expect = 1.5
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +2
Query: 440 YSKYT*SRTSWRLTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRG 580
Y++ ++ +W L+ R++ PSG R +RR +SG+ RS++ + +G
Sbjct: 24 YTRSCPTQRAWTLSHRALTVQPSGKRSGVQRR-KSGQPRSLSTMAQG 69
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,143,745
Number of Sequences: 237096
Number of extensions: 2231805
Number of successful extensions: 4598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4586
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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