Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30280.Seq
         (752 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM0288...   173   2e-43
AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional...   173   2e-43
AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,...   173   2e-43
AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic ...   159   4e-39
BT010235-1|AAQ23553.1|  424|Drosophila melanogaster RE52890p pro...    30   2.9  
AE014297-3237|AAF56066.1|  424|Drosophila melanogaster CG7023-PB...    30   2.9  
AE014298-1761|AAN09307.1|  618|Drosophila melanogaster CG32651-P...    29   5.2  
AE014297-3238|AAN13921.1|  364|Drosophila melanogaster CG7023-PA...    29   6.8  

>AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM02885
           protein.
          Length = 801

 Score =  173 bits (421), Expect = 2e-43
 Identities = 84/146 (57%), Positives = 97/146 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +   CIVLSDD CPDEKIRM            SDVVS+  CP VKYGKRV IL
Sbjct: 55  ILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRIL 114

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PID+S EG+TGNLFE+YLKPYF+EAYRPIH  D F    A  P   K        +   A
Sbjct: 115 PIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVA 174

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
           P+TVI CDG+PIKREEE E+LNAVGY
Sbjct: 175 PETVIFCDGDPIKREEEEESLNAVGY 200



 Score =  110 bits (264), Expect = 2e-24
 Identities = 54/66 (81%), Positives = 63/66 (95%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETV 256
           RRKETV
Sbjct: 60  RRKETV 65


>AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional
           endoplasmic reticulumATPase TER94 protein.
          Length = 801

 Score =  173 bits (421), Expect = 2e-43
 Identities = 84/146 (57%), Positives = 97/146 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +   CIVLSDD CPDEKIRM            SDVVS+  CP VKYGKRV IL
Sbjct: 55  ILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRIL 114

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PID+S EG+TGNLFE+YLKPYF+EAYRPIH  D F    A  P   K        +   A
Sbjct: 115 PIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVA 174

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
           P+TVI CDG+PIKREEE E+LNAVGY
Sbjct: 175 PETVIFCDGDPIKREEEEESLNAVGY 200



 Score =  110 bits (264), Expect = 2e-24
 Identities = 54/66 (81%), Positives = 63/66 (95%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETV 256
           RRKETV
Sbjct: 60  RRKETV 65


>AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,
           isoform A protein.
          Length = 801

 Score =  173 bits (421), Expect = 2e-43
 Identities = 84/146 (57%), Positives = 97/146 (66%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +   CIVLSDD CPDEKIRM            SDVVS+  CP VKYGKRV IL
Sbjct: 55  ILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRIL 114

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PID+S EG+TGNLFE+YLKPYF+EAYRPIH  D F    A  P   K        +   A
Sbjct: 115 PIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVA 174

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
           P+TVI CDG+PIKREEE E+LNAVGY
Sbjct: 175 PETVIFCDGDPIKREEEEESLNAVGY 200



 Score =  110 bits (264), Expect = 2e-24
 Identities = 54/66 (81%), Positives = 63/66 (95%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETV 256
           RRKETV
Sbjct: 60  RRKETV 65


>AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic
           reticulum membranefusion protein protein.
          Length = 799

 Score =  159 bits (386), Expect = 4e-39
 Identities = 79/146 (54%), Positives = 91/146 (62%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +   CIVLSDD CPDEKIRM            SDVVS+  CP VKYGKRV IL
Sbjct: 55  ILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRIL 114

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PID+S EG+TGNLFE+YLKPYF      IH  D F    A  P   K        +   A
Sbjct: 115 PIDESTEGVTGNLFEIYLKPYFPRGLSAIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVA 174

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGY 660
           P+TVI CDG+PIKREEE E+LNAVGY
Sbjct: 175 PETVIFCDGDPIKREEEEESLNAVGY 200



 Score =  110 bits (264), Expect = 2e-24
 Identities = 54/66 (81%), Positives = 63/66 (95%)
 Frame = +2

Query: 59  MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 238
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 239 RRKETV 256
           RRKETV
Sbjct: 60  RRKETV 65


>BT010235-1|AAQ23553.1|  424|Drosophila melanogaster RE52890p
           protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 169 GTFTGQNGATSTLPW*HSLAQGQTPQGNRCIVLSDDNCPDE 291
           G  TG NGA S   W H + QG      RC+     +  DE
Sbjct: 209 GNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDE 249


>AE014297-3237|AAF56066.1|  424|Drosophila melanogaster CG7023-PB,
           isoform B protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 169 GTFTGQNGATSTLPW*HSLAQGQTPQGNRCIVLSDDNCPDE 291
           G  TG NGA S   W H + QG      RC+     +  DE
Sbjct: 209 GNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDE 249


>AE014298-1761|AAN09307.1|  618|Drosophila melanogaster CG32651-PA
           protein.
          Length = 618

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 377 NMENESTYCQLMIQLRVLLAIYSKY 451
           N+ NES  C  +IQL+ +L  YSKY
Sbjct: 479 NVTNESVKCHAVIQLQNVLLEYSKY 503


>AE014297-3238|AAN13921.1|  364|Drosophila melanogaster CG7023-PA,
           isoform A protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 178 TGQNGATSTLPW*HSLAQGQTPQGNRCIVLSDDNCPDE 291
           TG NGA S   W H + QG      RC+     +  DE
Sbjct: 152 TGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDE 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,334,776
Number of Sequences: 53049
Number of extensions: 712557
Number of successful extensions: 1920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)