Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30280.Seq
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   151   5e-37
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   144   8e-35
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   144   8e-35
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC024859-23|ABD63209.1|  299|Caenorhabditis elegans Hypothetical...    28   6.2  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   8.2  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  151 bits (366), Expect = 5e-37
 Identities = 76/169 (44%), Positives = 106/169 (62%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  + +  I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+ D F    A      K  +         +
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVS 183

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGYG*HRAVVAKQLGAN*GRXWELPL 729
           PDT+IH +G+PIKREEE E++N +GY      V KQL A      ELPL
Sbjct: 184 PDTMIHYEGDPIKREEEEESMNDIGYD-DLGGVRKQL-AQIKEMVELPL 230



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/63 (66%), Positives = 55/63 (87%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 251 TVA 259
           +VA
Sbjct: 73  SVA 75


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  144 bits (348), Expect = 8e-35
 Identities = 80/169 (47%), Positives = 103/169 (60%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F    A      K  +         A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGYG*HRAVVAKQLGAN*GRXWELPL 729
           PDTVIH +G+PIKREEE EALN VGY      V KQL A      ELPL
Sbjct: 183 PDTVIHYEGDPIKREEEEEALNEVGYD-DLGGVRKQL-AQIKEMVELPL 229



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  144 bits (348), Expect = 8e-35
 Identities = 80/169 (47%), Positives = 103/169 (60%)
 Frame = +1

Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
           + +G+  +    IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWA 582
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+ D F    A      K  +         A
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVA 182

Query: 583 PDTVIHCDGEPIKREEEXEALNAVGYG*HRAVVAKQLGAN*GRXWELPL 729
           PDTVIH +G+PIKREEE EALN VGY      V KQL A      ELPL
Sbjct: 183 PDTVIHYEGDPIKREEEEEALNEVGYD-DLGGVRKQL-AQIKEMVELPL 229



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/63 (63%), Positives = 56/63 (88%)
 Frame = +2

Query: 71  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 250
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 251 TVA 259
           TV+
Sbjct: 73  TVS 75


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 654  RLWMTSGGCRKTTGRKLREXVGVATCVILHCFK 752
            RLW T   C K     +R+    A   I+HCFK
Sbjct: 945  RLWQTLSKCSKPDEPLIRQIKTKAEVCIVHCFK 977


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 85 IIRAFIICHFIQNLLLESKNYYNFY 11
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


>AC024859-23|ABD63209.1|  299|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.25 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 538 SKWSKQIHHHFASWAPDTVIHCDGEPIKREEEXEALNAVGY 660
           S ++K  +    S++   +I CD    K  EE  A+NAV Y
Sbjct: 117 SMYAKATNGSLLSFSEQQLIDCDDHGFKGCEEQPAINAVSY 157


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 199
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,051
Number of Sequences: 27780
Number of extensions: 361935
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)