Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30279.Seq
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   114   6e-26
02_04_0609 + 24312528-24313352                                         29   4.1  
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59...    28   5.4  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    28   5.4  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  114 bits (274), Expect = 6e-26
 Identities = 50/86 (58%), Positives = 66/86 (76%)
 Frame = -3

Query: 513 SASVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 334
           S + TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 333 LRHIYIRSPVGVKTVTKIFGGRKRNG 256
            R IY+R  +GV    KI+GGR+RNG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNG 89



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 24/48 (50%), Positives = 37/48 (77%)
 Frame = -2

Query: 256 STPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           S P HFC+SSG+I+R  LQ L+ + +++    GGR++T+QGRRDLD++
Sbjct: 90  SRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137


>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 337 HPSSY-LHSLTCWSQDCHQDLRWAQT*WSTPSHFCRSSG 224
           H SS  LHSL  + Q    D   A   W+T +H+C+ +G
Sbjct: 29  HRSSIDLHSLLDFKQGISSDPNEALKSWNTSTHYCKWTG 67


>05_01_0089 +
           589457-589506,589598-589741,589820-589903,590118-590261,
           590351-590401,590492-590641,591175-591488,592685-592815,
           593131-593451,594994-595057,595322-595443
          Length = 524

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 510 ASVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWF 355
           A++ V D  +++  + +  H K TG  ++ E+       ++  L PY  D F
Sbjct: 226 AALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = -3

Query: 483  QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY-IRSP 307
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  + I  P
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAHNIPIP 1002

Query: 306  VGVKTVTKIFGGRKRNGVHLHISAGHQAVL 217
                +V K    + R    + I A  Q +L
Sbjct: 1003 HNTDSVYKPIERKVRKFNPIEIPAKLQHLL 1032


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,724,788
Number of Sequences: 37544
Number of extensions: 260942
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)