Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30279.Seq
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p pro...   147   1e-35
AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal pr...   147   1e-35
AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC...   147   1e-35
AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB...   147   1e-35
AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA...   147   1e-35
X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal prot...   146   2e-35
AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p pro...   115   6e-26
AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB...   115   6e-26

>AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p
           protein.
          Length = 156

 Score =  147 bits (356), Expect = 1e-35
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+ILRH
Sbjct: 4   VTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGVH 250
           +Y RSP GV ++TKI+GGRKRNGVH
Sbjct: 64  LYHRSPAGVGSITKIYGGRKRNGVH 88



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PSHFCR++   ARKALQ+LE  +LVEK  DGGR L++ G+RDLDRI
Sbjct: 89  PSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRI 134


>AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal
           protein S19 protein.
          Length = 156

 Score =  147 bits (356), Expect = 1e-35
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+ILRH
Sbjct: 4   VTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGVH 250
           +Y RSP GV ++TKI+GGRKRNGVH
Sbjct: 64  LYHRSPAGVGSITKIYGGRKRNGVH 88



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PSHFCR++   ARKALQ+LE  +LVEK  DGGR L++ G+RDLDRI
Sbjct: 89  PSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRI 134


>AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC,
           isoform C protein.
          Length = 156

 Score =  147 bits (356), Expect = 1e-35
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+ILRH
Sbjct: 4   VTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGVH 250
           +Y RSP GV ++TKI+GGRKRNGVH
Sbjct: 64  LYHRSPAGVGSITKIYGGRKRNGVH 88



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PSHFCR++   ARKALQ+LE  +LVEK  DGGR L++ G+RDLDRI
Sbjct: 89  PSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRI 134


>AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB,
           isoform B protein.
          Length = 156

 Score =  147 bits (356), Expect = 1e-35
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+ILRH
Sbjct: 4   VTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGVH 250
           +Y RSP GV ++TKI+GGRKRNGVH
Sbjct: 64  LYHRSPAGVGSITKIYGGRKRNGVH 88



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PSHFCR++   ARKALQ+LE  +LVEK  DGGR L++ G+RDLDRI
Sbjct: 89  PSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRI 134


>AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA,
           isoform A protein.
          Length = 156

 Score =  147 bits (356), Expect = 1e-35
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+ILRH
Sbjct: 4   VTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGVH 250
           +Y RSP GV ++TKI+GGRKRNGVH
Sbjct: 64  LYHRSPAGVGSITKIYGGRKRNGVH 88



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PSHFCR++   ARKALQ+LE  +LVEK  DGGR L++ G+RDLDRI
Sbjct: 89  PSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRI 134


>X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal protein
           S19 protein.
          Length = 156

 Score =  146 bits (355), Expect = 2e-35
 Identities = 62/85 (72%), Positives = 75/85 (88%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVKD++Q  + K VA  LKKTGK+KVP+ MD++KTA+FKELAPYDPDWFYVRCA+ILRH
Sbjct: 4   VTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIIKTAKFKELAPYDPDWFYVRCASILRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGVH 250
           +Y RSP GV ++TKI+GGRKRNGVH
Sbjct: 64  LYHRSPAGVGSITKIYGGRKRNGVH 88



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PSHFCR++   ARKALQ+LE  +LVEK  DGGR L++ G+RDLDRI
Sbjct: 89  PSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRI 134


>AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p
           protein.
          Length = 155

 Score =  115 bits (276), Expect = 6e-26
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVK+++Q  + K +AA LKK+GK+ VPE    +KT +FKE AP D DWFY RCA+I+RH
Sbjct: 4   VTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGV 253
           +Y+RSP GV   TK++ GRKRNGV
Sbjct: 64  LYLRSPAGVGAFTKVYSGRKRNGV 87



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PS  CRSS    RKALQ+LEA  +VE+  DGGR LT QG+R+LDRI
Sbjct: 89  PSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRNLDRI 134


>AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB
           protein.
          Length = 155

 Score =  115 bits (276), Expect = 6e-26
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -3

Query: 504 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 325
           VTVK+++Q  + K +AA LKK+GK+ VPE    +KT +FKE AP D DWFY RCA+I+RH
Sbjct: 4   VTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRH 63

Query: 324 IYIRSPVGVKTVTKIFGGRKRNGV 253
           +Y+RSP GV   TK++ GRKRNGV
Sbjct: 64  LYLRSPAGVGAFTKVYSGRKRNGV 87



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = -2

Query: 250 PSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           PS  CRSS    RKALQ+LEA  +VE+  DGGR LT QG+R+LDRI
Sbjct: 89  PSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRNLDRI 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,653,960
Number of Sequences: 53049
Number of extensions: 454373
Number of successful extensions: 1122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)