Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30279.Seq
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   105   2e-23
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   105   2e-23
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   104   4e-23
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   2.0  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   2.6  
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   3.4  

>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  105 bits (253), Expect = 2e-23
 Identities = 44/82 (53%), Positives = 61/82 (74%)
 Frame = -3

Query: 501 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 322
           TVKDV   + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 321 YIRSPVGVKTVTKIFGGRKRNG 256
           Y+R  +GV    +I+GG KRNG
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNG 87



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -2

Query: 256 STPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           S P HFC+SSG +AR  LQ L+ + +V+    GGR +T+ G+RDLD++
Sbjct: 88  SRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135


>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  105 bits (252), Expect = 2e-23
 Identities = 45/82 (54%), Positives = 60/82 (73%)
 Frame = -3

Query: 501 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 322
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65

Query: 321 YIRSPVGVKTVTKIFGGRKRNG 256
           Y+R  +GV    +I+GG KRNG
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNG 87



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = -2

Query: 256 STPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           S P HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 88  SRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  104 bits (250), Expect = 4e-23
 Identities = 43/82 (52%), Positives = 60/82 (73%)
 Frame = -3

Query: 501 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 322
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 321 YIRSPVGVKTVTKIFGGRKRNG 256
           Y+R  +GV    +I+GG KRNG
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNG 87



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = -2

Query: 256 STPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 113
           S P HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 88  SRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 157 HRPELSQQASMPPTIAKPCVQYCLM 231
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 456 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 310
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 241 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 113
           FCRSSG  A    + + ++ + + K +DG ++L    RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,838,737
Number of Sequences: 28952
Number of extensions: 203220
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)